All software
microGWAS
microGWAS is a snakemake-powered pipeline to carry out an end-to-end microbial GWAS analysis. Starting from genome assemblies and a phenotype file, microGWAS will run a number of associations using pyseer, annotate the associations results, and generating a number of functional enrichment tests.
- GWAS
- mGWAS
- Pipeline
- + 2
- Python
- Shell
- R
Multiphase Cases Repository by HZDR for OpenFOAM Foundation Software
This repository contains simulation setups for Multiphase Code Repository by HZDR. The simulation setups are divided into mono- and polydisperse bubbly flows utilizing the set of Baseline models of HZDR, setups using the morphology-adaptive multifield two-fluid model and miscellaneous cases.
- Baseline model
- Computational Fluid Dynamics
- Euler-Euler method
- + 9
PyAPI-RTS
A Python library to read and manipulate RSCAD® draft files, used for power system modeling and simulation on RTDS simulators.
- Energy
- ESD
- Modelling
- + 1
- Python
supersonic-effects
A Python package to model ozone column changes and radiative effects in response to various aircraft emissions at different altitudes over specific regions. The model combines empirical emission sensitivities to estimate effects of supersonic transport on ozone and radiation.
- aircraft
- Earth & Environment
- Earth System Modelling
- + 4
- Python
ehrapy
ehrapy is a modular open-source Python framework designed for exploratory end-to-end analysis of heterogeneous epidemiology and electronic health record data.
- Data analysis
- open source
- python
- Python
hermes
Implementation of the HERMES workflow to automate software publication with rich metadata.
- FAIR Software
- metadata
- python
- Python
Tigramite
Tigramite is a python package for causal inference with a focus on time series data. It allows to efficiently estimate causal graphs from high-dimensional time series datasets (causal discovery) and to use graphs for the estimation and prediction of direct, total, and mediated effects.
- causal inference
- python
- time series analysis
- Jupyter Notebook
- Python
UQTestFuns
A Python3 library of uncertainty quantification (UQ) test functions
- Benchmark
- python
- Software Testing
- + 1
- Python
- TeX
ePowCoRe
A generic representation of power grids, enabling open-source model conversion modules for common open and proprietary modeling tools.
- Energy
- ESD
- python
- Python
- MATLAB
ETHOS.PeNALPS
ETHOS.PeNALPS (Petri Net Agent based Load Profile Simulator) is a Python library for the simulation of load profiles of plants of industrial manufacturing processes. Load profiles are energy demand time series.
- Energy System Analysis
- ESD
- ESD - Topic 1
- + 4
- Python
- Jupyter Notebook
- TeX
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R