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121-132 of 217

pyGMS

pyGMS: lithosphere-scale rheological analyses of GMS models with Python

geophysics
geothermal modeling
GMS
+ 2

Python
Makefile

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

bioinformatics
Data analysis
python

Python
R

SciTS

A tool to benchmark Time-series on different databases.

Benchmark
Benchmarking
database
+ 3

Jupyter Notebook
HTML
C#
+ 2

sdaas

Simple machine learning tool in Python computing an anomaly score of seismic waveform amplitudes. By using a pre-trained Isolation forest model, the program can be used for identification of outliers in semismic data, assign robustness weights, or check instruments and metadata errors

Machine learning
outlier detection
seismic metadata
+ 2

Python

UrMoAC

UrMoAC is a tool for computing accessibility measures, supporting aggregation, variable limits, and intermodality.

accessibility measures
land-use indicators

Java
Python
Batchfile

VASCA

The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.

Astronomy
catalogue
Data analysis
+ 6

Jupyter Notebook
Python

wps-command-line-tool-repository

A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.

Earth & Environment
Remote Procedure Calls
Web Processing Service

Java
Scheme
Python
+ 3

Alice2Modelica

This tool allows for the automated generation and calibration of white-box modelica room models based on a room description in the mini-language Modelica.

Energy
ESD
ESD - Topic 2
+ 3

Python

Alpaca

Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.

FAIR Data
Information
metadata
+ 3

Python

AMIRIS

AMIRIS is the open Agent-based Market model for the Investigation of Renewable and Integrated energy Systems. It aims at enabling scientists to dissect the complex questions arising with respect to future energy markets, their market design, and energy-related policy instruments.

Agent-based Model
electricity
Energy
+ 4

Java
Python
BibTeX

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

Arbor

Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.

GPU
High performance computing
Neural network
+ 4

C++
AGS Script
Python
+ 7