All software
RadPlanBio
RadiationDosePlan- Image/Biomarker-Outcome-platform (RPB) is a collection of open source software systems integrated via portal to deliver a core software infrastructure necessary to support the operation of non-commercial trials unit.
- Clinical-Research
- Health
- Radiotherapy
- + 1
- Java
- HTML
- CSS
- + 1
Prospective Monitoring and Management - App (PIA)
PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS
- Data Collection
- Digital Infrastructure
- epidemiology
- + 5
- TypeScript
- HTML
- JavaScript
- + 9
Helmholtz Research Software Directory
The Helmholtz Research Software Directory is a place to discover and promote research software. Designed for Research Software Engineers and Scientists, it aims to foster FAIR and reuseability of software.
- FAIR Software
- TSX
- TypeScript
- Java
- + 2
dCache
dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.
- data managment
- FAIR Data
- Java
- JavaScript
- XSLT
- + 14
Trimmomatic
Trimmomatic is a command line tool that performs a variety of functions for Illumina paired-end and single-end sequencing data, including sequence trimming and adapter removal. It is a flexible and efficient NGS preprocessing tool, which greatly improves downstream applications.
- Earth & Environment
- Illumina
- NGS
- Java
- Dockerfile
UrMoAC
UrMoAC is a tool for computing accessibility measures, supporting aggregation, variable limits, and intermodality.
- accessibility measures
- land-use indicators
- Java
- Python
- Batchfile
wps-command-line-tool-repository
A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.
- Earth & Environment
- Remote Procedure Calls
- Web Processing Service
- Java
- Scheme
- Python
- + 3
base-repo
Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.
- Datacite
- data managment
- FAIR Data
- + 1
- Java
- Shell
- Dockerfile
Bending Stiffness
Sample Java code analysing "Bending Stiffness of Actin Filaments" Experiment.
- Actin
- Cytoskeleton
- Soft Matter Physics
- Java
Continuous Integration of Architectural Performance Models (CIPM)
The CIPM approach keeps source code and architectural performance models consistent during software development and operation.
- Java
- Xtend
- Batchfile
GIPPtools
A collection of software utilities that aid with initial pre-processing of recorded (seismic) data supporting users that borrow instruments from the GIPP.
- Cube
- Earth & Environment
- geophysics
- + 4
- Java
- TeX
- Shell
- + 2
LiSSA
LiSSA: A Framework for Generic Traceability Link Recovery In software development and maintenance, numerous artifacts such as requirements and code are produced. LiSSA aims to provide a generic solution for Traceability Link Recovery (TLR) by utilizing LLMs in combination with RAG techniques.
- Large Language Model (LLM)
- Retrieval Augmented Generation (RAG)
- Traceability Link Recovery
- Java
- Python