All software
Ginkgo
Ginkgo is a high-performance math library for the solution of sparse linear systems on GPUs (AMD, Intel, NVIDIA). Ginkgo is implemented using modern C++ and provides preconditioned Krylov solvers, multigrid, sparse direct solvers, mixed precision, and batched functionality.
- GPU
- High performance computing
- Large linear equation system
- + 4
- C++
- CMake
- Cuda
- + 4
UrbEm - Urban Emission downscaling for air quality modeling
UrbEm enables in a modular manner downscaling of gridded regional emissions with specific spatial proxies based on a variety of open access, robust, sustainable and frequently updated sources. UrbEm can be applied to any urban area in Europe and provides methodological homogeneity between cities.
- Air quality
- Chemistry Transport Modeling
- Earth & Environment
- + 2
- Python
- R
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
HilbertCurve
Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- C++
- CSS
- + 1
UltraMassExplorer (UME)
Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.
- analytical chemistry
- Carbon cycle
- Data analysis
- + 7
- R
- BibTeX
simona
This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
- JavaScript
- + 3
spiralize
It visualizes data along an Archimedean spiral, makes so-called spiral graph or spiral chart. It has two major advantages for visualization: 1. It is able to visualize data with very long axis with high resolution. 2. It is efficient for time series data to reveal periodic patterns.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
cyCONDOR
cyCONDOR, an easy-to-use computational framework for end-to-end High-Dimensional Cytometry data analysis. cyCONDOR offers guided pre-processing, clustering, dimensionality reduction, machine learning, pseudotime analysis, and batch integration, making it ideal for clinical and research settings.
- Data Visualization
- Health
- Machine learning
- + 2
- R
hCoCena - horizontal integration and analysis of transcriptomics datasets
hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.
- Data analysis
- Gene Expression
- Health
- + 1
- R
pkgndep
A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- HTML
- JavaScript
- + 1
Rankings Reloaded
Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.
- Data analysis
- Data Visualization
- Information
- + 1
- R