All software
rGREAT
GREAT is a type of functional enrichment analysis directly performed on genomic regions. This package implements the GREAT algorithm, also it supports directly interacting with the GREAT web service (the online GREAT analysis). Both analysis can be viewed by a Shiny application.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
Ginkgo
Ginkgo is a high-performance math library for the solution of sparse linear systems on GPUs (AMD, Intel, NVIDIA). Ginkgo is implemented using modern C++ and provides preconditioned Krylov solvers, multigrid, sparse direct solvers, mixed precision, and batched functionality.
- GPU
- High performance computing
- Large linear equation system
- + 4
- C++
- CMake
- Cuda
- + 4
UrbEm - Urban Emission downscaling for air quality modeling
UrbEm enables in a modular manner downscaling of gridded regional emissions with specific spatial proxies based on a variety of open access, robust, sustainable and frequently updated sources. UrbEm can be applied to any urban area in Europe and provides methodological homogeneity between cities.
- Air quality
- Chemistry Transport Modeling
- Earth & Environment
- + 2
- Python
- R
cola
Subgroup classification is a basic task in genomic data analysis. The cola package provides a general framework for subgroup classification by consensus partitioning.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
HilbertCurve
Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- C++
- CSS
- + 1
UltraMassExplorer (UME)
Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.
- analytical chemistry
- Carbon cycle
- Data analysis
- + 7
- R
spiralize
It visualizes data along an Archimedean spiral, makes so-called spiral graph or spiral chart. It has two major advantages for visualization: 1. It is able to visualize data with very long axis with high resolution. 2. It is efficient for time series data to reveal periodic patterns.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- JavaScript
- CSS
hCoCena - horizontal integration and analysis of transcriptomics datasets
hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.
- Data analysis
- Gene Expression
- Health
- + 1
- R
pkgndep
A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- HTML
- JavaScript
- + 1
simona
This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
- JavaScript
- + 3
cyCONDOR
cyCONDOR, an easy-to-use computational framework for end-to-end High-Dimensional Cytometry data analysis. cyCONDOR offers guided pre-processing, clustering, dimensionality reduction, machine learning, pseudotime analysis, and batch integration, making it ideal for clinical and research settings.
- Data Visualization
- Health
- Machine learning
- + 2
- R