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13-23 of 23

GIPPtools

A collection of software utilities that aid with initial pre-processing of recorded (seismic) data supporting users that borrow instruments from the GIPP.

Cube
Earth & Environment
geophysics
+ 4

Java
Shell
TeX
+ 2

ETHOS.HiSim - Household Infrastructure and Building Simulator

ETHOS.HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.

ESD
ESD - Topic 1
Modeling
+ 2

Python
Jupyter Notebook
TeX
+ 3

Independent Parallel Particle Layer (IPPL)

IPPL is a C++ library to develop performance portable code for fully Eulerian, Lagrangian or hybrid Eulerian-Lagrangian methods. IPPL supports simulations in one to six dimensions, mixed precision, and asynchronous execution in different execution spaces (e.g. CPUs and GPUs).

Computational Fluid Dynamics
GPU
High performance computing
+ 5

C++
TeX
CMake
+ 2

JuKKR

The Korringa-Kohn-Rostoker (KKR) Greens function method is a highly accurate all-electron method to perform density functional theory calculations for the prediction of materials properties based on quantum mechanical simulations.

CPU
Density functional theory
High performance computing
+ 5

Fortran Free Form
Fortran
TeX
+ 2

methylKit

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.

MO|DE.behave

MO|DE.behave is a Python-based software package for the estimation and simulation of discrete choice models and shall enable rapid quantitative analyses based on survey data on choice behavior, utilizing advanced discrete choice methods. Please refer to 'doi.org/10.21105/joss.05265'.

Python
TeX

PeakPerformance

PeakPerformance is a Python toolbox for estimating peak areas from mass-spectrometry or HPLC datasets under uncertainty. It applies Bayesian inference using the PyMC library to parametric models of peak curves.

Data analysis
Earth & Environment
mass spectrometry
+ 4

Python
TeX

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7

SicHash

A perfect hash function is a function that has no collisions on a given set. SicHash places objects in a cuckoo hash table and then stores the final hash function choice of each object in a retrieval data structure. Using irregular cuckoo hashing, each object has a different number of hash functions

C++
TeX
Shell
+ 2

supervillain

supervillain does Markov-Chain Monte Carlo for modified Villain constructions of quantum field theory.

computational physics
Monte Carlo simulation
Physics
+ 2

Python
TeX
Batchfile
+ 1

Tamarin Prover

The Tamarin Prover is a state-of-the-art tool for the analysis of security protocols, which underpin the security of modern distributed computing.

Cryptographic Protocols
Formal Verification
Information

Haskell
Python
JavaScript
+ 9