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dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

data managment
FAIR Data

Java
JavaScript
XSLT
+ 14

PeriHub

PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.

Data Visualization
High performance computing
Modelling
+ 2

Python
Vue
TypeScript
+ 7

wps-command-line-tool-repository

A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.

Earth & Environment
Remote Procedure Calls
Web Processing Service

Java
Scheme
Python
+ 3

base-repo

Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.

Datacite
data managment
FAIR Data
+ 1

Java
Shell
Dockerfile

DAMNIT

DAMNIT (Data And Metadata iNspection Interactive Thing) is a tool developed by the Data Analysis group at the European XFEL to provide users with a way to automatically create an overview of their experiment, hopefully replacing the manually-created spreadsheets that are often used.

Data analysis
FAIR Data
metadata
+ 1

Python
Dockerfile

flexynesis

A deep-learning based multi-omics sequencing data integration suite

Python
Scheme
Dockerfile

FSQC

This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.

Data analysis
MRI
Neuroimaging
+ 2

Python
Dockerfile

GLAES

GLAES (Geospatial Land Availability for Energy Systems) is a geospatial framework for land eligibility analyses (LEA) to incorporate various geodata into one assessment. It also allows to optimally distribute placements. The workflow is applicable to any context where land constraints are needed.

ESD
ESD - Topic 1

Python
Dockerfile

ETHOS.HiSim - Household Infrastructure and Building Simulator

ETHOS.HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.

ESD
ESD - Topic 1
Modeling
+ 2

Python
Jupyter Notebook
TeX
+ 3

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

Data Visualization
MRI
open source
+ 1

Jupyter Notebook
HTML
MATLAB
+ 5

JupyterHub Outpost

JupyterHub Outpost can be used as an additional, external source to start and manage single-user servers. Like in JupyterHub itself, different Spawners can be configured at the Outpost. It's best used together with the jupyterhub-outpostspawner configured at JupyterHub.

Jupyter
Kubernetes
python

Python
Shell
Dockerfile

MooViE

MooViE is an easy-to-use tool to display multidimensional data with input-output semantics from all research domains. It supports researcher in studying the mapping of several inputs to several outputs in large multivariate data sets.

C++
Data Visualization

C++
CMake
Dockerfile
+ 2