All software
MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
- Agent-based Model
- C++
- compartmental model
- + 12
- C++
- Python
- CMake
- + 3
SpecHomo
SpecHomo is a Python package for spectral homogenization of multispectral satellite data, i.e., for the transformation of the spectral information of one sensor into the spectral domain of another one.
- Earth & Environment
- Remote sensing
- spectral homogenization
- Python
- Makefile
- Shell
VarFish
VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...
- Annotation
- Data analysis
- Health
- + 1
- Python
- Vue
- TypeScript
- + 9
xDECAF
An extensible data flow diagram constraint analysis framework for information security
- Data Flow Diagram
- Modeling
- open source
- + 1
- Java
- Python
- Nix
- + 1
KaGen - Communication-free Massively Distributed Graph Generators
Network generators help to provide synthethic instances with controllable parameters by algorithm developers and researchers. KaGen provides generators for a large variety of network models, which are communication-free by making use of pseudorandomization and divide-and-conquer schemes.
- Graph Generation
- High performance computing
- Network Analysis
- + 1
- C++
- C
- Python
- + 2
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- algorithm engineering
- Graph algorithms
- Network Analysis
- C++
- Cython
- Python
- + 9
FatSegNet
A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.
- Data analysis
- MRI
- open source
- Python
- Dockerfile
- Shell
Album
Album is open-source infrastructure for building executable digital libraries of reusable, discoverable, and reproducible scientific software methods.
- FAIR Software
- GUI
- Interactivity
- + 5
- Python
- Dockerfile
- Shell
Medical Imaging Interaction Toolkit (MITK)
A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.
- Artificial Intelligence
- C++
- Data Visualization
- + 7
- C++
- CMake
- C
- + 8
LYNX
LYNX (Lithosphere dYnamics Numerical toolboX) is a novel numerical simulator for modelling thermo-poromechanical coupled processes driving the deformation dynamics of the lithosphere.
- damage rheology and porosity feedback
- Earth & Environment
- Explicit visco-elasto-plastic rheology
- + 1
- C++
- Assembly
- Makefile
- + 4
XCASCADE (3D)
XCASCADE (3D) software models electron cascades in solids induced by X-ray impact or by an impact of high-energy electron in non-relativistic energy regime. The code can provide temporal and spatial characteristics of the excited electrons, such as their transient density and energy.
- Electron cascading
- Modeling
- Monte Carlo simulation
- + 3
- Fortran Free Form
- Makefile
- Shell