All software
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5
JURI
JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.
- JavaScript
- HTML
- CSS
- + 5
LabFrog
Configurable python-Flask application for structured data capture and exploration.
- FAIR Data
- FAIR Software
- Flask
- + 2
- Python
- HTML
- JavaScript
- + 2
me-compute
me-compute: a Python software to download events and data from FDSN web services and compute their energy magnitude (Me)
- energy magnitude
- FDSN
- seismic data
- + 1
- Python
- HTML
MetaStore
MetaStore is a research data repository software for storing metadata documents and schemas. Quality and consistency are ensured by associating and validating each document against a schema. It supports JSON and XML.
- data managment
- FAIR Data
- metadata
- + 1
- Java
- JavaScript
- HTML
- + 3
mytoken
Mytoken is a web service to obtain OpenID Connect Access Tokens in an easy but secure way for extended periods of time and across multiple devices. In particular, mytoken was developed to provide OIDC Access Tokens to long-running compute jobs.
- AAI
- Helmholtz AAI
- OIDC
- + 2
- Go
- Svelte
- TypeScript
- + 5
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- C++
- Cython
- Python
- + 9
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
PiGx
PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.
- HTML
- Python
- R
- + 7
RO Crate Java
A Java library to create and modify RO-Crates. The aim of this implementation is to not require too deep knowledge of the specification, and avoiding crates which do not fully comply to the specification, at the same time.
- data managment
- FAIR Data
- FAIR Software
- + 3
- Java
- HTML
- FreeMarker
SampleDB
SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.
- Electronic Lab Notebook
- metadata
- Research Data Management
- Python
- HTML
- JavaScript
- + 3