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37-48 of 48

ProFASi

PROFASI (PROtein Folding and Aggregation SImulator) is a C++ package for HPC Monte Carlo simulations of protein folding and aggregation. It provides an all atom, implicit solvent force field, and a set of tools to perform Monte Carlo simulations.

Monte Carlo
Peptide Aggregation
Protein folding
+ 2

C++
Hack
CMake
+ 2

pySDC

pySDC is a Python implementation of the spectral deferred correction approach and its flavors, esp. the parallel-in-time extension PFASST. It is intended for rapid prototyping and educational purposes. New ideas can be tested and first toy problems can be easily implemented.

collocation
high-performance computing
Information
+ 4

Jupyter Notebook
Python
C++
+ 2

Score-P

Score-P provides insight into massively parallel HPC applications, their communication, synchronization, I/O, and scaling behaviour to pinpoint performance bottlenecks and their causes.

hpc
Information
instrumentation
+ 5

C
C++
M4Sugar
+ 2

415

SERGHEI

The Simulation EnviRonment for Geomorphology, Hydrodynamics and Ecohydrology in Integrated form (SERGHEI) is a multi-dimensional, multi-domain, and multi-physics model framework for environmental and landscape simulation, intended to simulate water flow and transport across landscape scales.

Earth & Environment
GPU
High performance computing
+ 4

C++
PostScript
Shell
+ 2

ShockHash

A perfect hash function is a function that has no collisions on a given set. ShockHash constructs very compact perfect hash functions significantly faster than previous approaches.

C++
CMake
Shell

SicHash

A perfect hash function is a function that has no collisions on a given set. SicHash places objects in a cuckoo hash table and then stores the final hash function choice of each object in a retrieval data structure. Using irregular cuckoo hashing, each object has a different number of hash functions

C++
TeX
Shell
+ 2

SMASH - A hadronic transport approach

SMASH is a relativistic hadronic transport approach for the dynamical description of heavy-ion reactions. It is a microscopic non-equilibrium approach and incorporates all well known hadronic states and their interactions.

CPU
Matter
open source
+ 1

C++
CMake
Shell
+ 3

SMG2S

SMG2S (Sparse Matrix Generator with Given Spectrum) is able to generate large-scale non-Hermitian and non-Symmetric matrices in parallel with the spectral distribution functions or eigenvalues given by users, and the spectrum of generated matrix is the same as the one specified by the users.

CPU
High performance computing
Matrix Computation
+ 1

C++
Python
CMake
+ 1

t8code

t8code (spoken as "tetcode") is a C/C++ library to manage parallel adaptive meshes with various element types. t8code uses a collection (a forest) of multiple connected adaptive space-trees in parallel and scales to at least one million MPI ranks and over 1 trillion mesh elements.

data managment
Data Visualization
exascale
+ 3

C++
C
Makefile
+ 6

TiGL

TiGL is a parametric aircraft geometry modeler. Using the CPACS file format and TiGL, you can model a wide range of aircraft, spacecraft and rotorcraft.

C++
C
CMake
+ 8

TiXI

TiXI is a fast and simple XML interface library and could be used from applications written in C, C++, Fortran, JAVA and Python.

C++
C
Python
+ 7

TSMP

The Terrestrial Systems Modelling Platform (TSMP) is an open source framework implementing a scale-consistent, highly modular, massively parallel regional Earth system model. It represents transport and feedback processes of mass, energy and momentum across geo-ecosystem compartments and scales.

Earth & Environment

Fortran
Shell
C
+ 10