All software
QUAST
QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.
- Data Visualization
- FAIR Software
- Genome assembly
- + 4
- AMPL
- C++
- Python
- + 13
NEST
NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.
- Computational neuroscience
- exascale
- Modeling
- + 3
- C++
- Python
- CMake
- + 3
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- algorithm engineering
- Graph algorithms
- Network Analysis
- C++
- Cython
- Python
- + 9
TetraX
TetraX is a package for finite-element-method (FEM) micromagnetic modeling with the aim of providing user-friendly and versatile micromagnetic workflows. Among other features, it allows to efficiently calculate spin-wave spectra in different magnetic systems of general geometries.
- finite-element-method
- magnetization dynamics
- micromagnetic modeling
- + 4
- Python
- C
- Cython
KaMinPar
Shared-Memory and Distributed-Memory Graph Partitioning
- Data analysis
- Graphs
- High performance computing
- + 3
- C++
- CMake
- Python
- + 4
ELECTRODE
ELECTRODE extends the atomistic simulation tool LAMMPS to model different types of electrochemical situations. Simulations are performed at constant potential or constant charge using different approaches to control potential or charge at the electrodes.
- Constant Potential Method
- Electrochemistry
- Molecular Dynamics
- C++
- Tcl
- C
- + 26
EpsteinLib
High-performance computation of the Epstein zeta function, including a Python, Julia and Mathematica wrapper.
- Condensed Matter Physics
- Epstein zeta function
- Lattice Sums
- + 2
- C
- Wolfram Language
- Python
- + 5
pyPDAF
pyPDAF provides the functionality to use the Parallel Data Assimilation Framework (PDAF) fully in Python. One can use all functionality of PDAF while implementing the case-specific code for the chosen data assimilation application in Python.
- Atmospheric science
- Bayesian inference
- data assimilation
- + 8
- Cython
- Python
- Fortran
- + 4
TREAMS
TREAMS is an open-source program to perform T-matrix-based scattering calculations for nanophotonic systems. It focuses on efficiently solving the interaction in 1D, 2D, and 3D lattices of complex unit cells using quickly convergent lattice sums. It also solves the interaction in finite clusters.
- Python
- Cython
- Makefile