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25-36 of 36

novoSpaRc

novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.

Data analysis
open source
single-cell RNA-seq

Jupyter Notebook
HTML
Python

PeriHub

PeriHub is a platform that provides a numerical implementation of the peridynamic theory. It is an extension of the open source Peridigm software. Peridynamics is a non-local theory that overcomes discontinuity problems of the classical theory of continuum mechanics.

Data Visualization
High performance computing
Modelling
+ 2

Python
Vue
JavaScript
+ 5

Prospective Monitoring and Management - App (PIA)

PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS

Data Collection
Digital Infrastructure
epidemiology
+ 5

TypeScript
HTML
JavaScript
+ 10

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7

RadPlanBio

RadiationDosePlan- Image/Biomarker-Outcome-platform (RPB) is a collection of open source software systems integrated via portal to deliver a core software infrastructure necessary to support the operation of non-commercial trials unit.

Clinical-Research
Health
Radiotherapy
+ 1

Java
HTML
CSS
+ 1

RCE

RCE is a distributed integration environment for scientists and engineers to analyze, optimize, and design complex systems like aircraft, ships, or satellites.

Aeronautics, Space and Transport
collaboration
Distributed Execution
+ 3

Java
HTML
Gherkin
+ 8

SampleDB

SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.

Electronic Lab Notebook
metadata
Research Data Management

Python
HTML
JavaScript
+ 4

stream2segment

A Python library and command line application to download, process and visualize event-based seismic waveform segments, specifically designed to manage big volumes of data

Big data
data managment
Data Visualization
+ 5

Python
Jupyter Notebook
HTML
+ 1

PaN Training Catalogue for the Photon & Neutron Community

The PaN Training Catalogue is a fork from the TeSS Training Catalogue (ELIXIR) and was initially developed in our Photon and Neutron (PaN) projects ExPaNDS and PaNOSC.

catalogue
e-learning
metadata
+ 3

Ruby
HTML
JavaScript
+ 4

TRIDEC Cloud

TRIDEC Cloud serves functionality to handle and share threat specific information. It integrates services for obtaining event related geo-data, e.g. of earthquakes, for automated computations, e.g. of tsunami propagations, for mapping, summarizing, and communicating hazard specific data.

early warning
Earth & Environment
GPU
+ 6

Python
Vue
Shell
+ 6

TSMP

The Terrestrial Systems Modelling Platform (TSMP) is an open source framework implementing a scale-consistent, highly modular, massively parallel regional Earth system model. It represents transport and feedback processes of mass, energy and momentum across geo-ecosystem compartments and scales.

Earth & Environment

Fortran
Shell
C
+ 10

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Annotation
Data analysis
Health
+ 1

Python
Vue
JavaScript
+ 8