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121-132 of 152

SampleDB

SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.

Electronic Lab Notebook
metadata
Research Data Management

Python
HTML
JavaScript
+ 4

SaQC

A consistent, extensible, easy-to-use tool/framework for reproducible quality control of time series data.

Data analysis
Earth & Environment
Quality control
+ 1

Python

scanpy

Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.

bioinformatics
Data analysis
python

Python
R

SciTS

A tool to benchmark Time-series on different databases.

Benchmark
Benchmarking
database
+ 3

Jupyter Notebook
C#
Python
+ 1

sdaas

Simple machine learning tool in Python computing an anomaly score of seismic waveform amplitudes. By using a pre-trained Isolation forest model, the program can be used for identification of outliers in semismic data, assign robustness weights, or check instruments and metadata errors

Machine learning
outlier detection
seismic metadata
+ 2

Python

SeisBench: A toolbox for machine learning in seismology

SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.

Earth & Environment
GPU
Helmholtz AI
+ 4

Jupyter Notebook
Python

sfctools

sfctools is a modeling suite for agent-based, macroeconomic and stock-flow consistent (ABM-SFC) modeling written in Python. It concentrates on agents in economics and provides a graphical model design interface.

Economics
Energy
ESD
+ 4

Python
BibTeX
Roff

SMASH - A hadronic transport approach

SMASH is a relativistic hadronic transport approach for the dynamical description of heavy-ion reactions. It is a microscopic non-equilibrium approach and incorporates all well known hadronic states and their interactions.

CPU
Matter
open source
+ 1

C++
CMake
Shell
+ 3

SMG2S

SMG2S (Sparse Matrix Generator with Given Spectrum) is able to generate large-scale non-Hermitian and non-Symmetric matrices in parallel with the spectral distribution functions or eigenvalues given by users, and the spectrum of generated matrix is the same as the one specified by the users.

CPU
High performance computing
Matrix Computation
+ 1

C++
Python
CMake
+ 1

somesy

Somesy (software metadata sync) is a CLI tool to avoid messy software project metadata by keeping it in sync.

FAIR Software
python

Python

SpecHomo

SpecHomo is a Python package for spectral homogenization of multispectral satellite data, i.e., for the transformation of the spectral information of one sensor into the spectral domain of another one.

Earth & Environment
Remote sensing
spectral homogenization

Python
Makefile
Shell

Stable-Baselines3

Stable Baselines3 (SB3) is a set of reliable implementations of reinforcement learning algorithms in PyTorch.

Machine learning
robotics

Python
Shell
Makefile
+ 1