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AiiDA-KKR

This AiiDA plugin provides high-throughput automation and FAIR data management for the Jülich KKR codes.

Data Visualization
FAIR Data
Information
+ 4

Python
Shell
OpenEdge ABL

AiiDA-Spirit

AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).

data managment
Data Visualization
FAIR Data
+ 5

JavaScript
Python
HTML
+ 1

Allpix Squared

Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.

Drift-Diffusion
Geant4
Monte Carlo
+ 5

C++
CMake
C
+ 2

Alpaca

Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.

FAIR Data
Information
metadata
+ 3

Python

AMIRIS

AMIRIS is the open Agent-based Market model for the Investigation of Renewable and Integrated energy Systems. It aims at enabling scientists to dissect the complex questions arising with respect to future energy markets, their market design, and energy-related policy instruments.

Agent-based Model
electricity
Energy
+ 2

Java
Python
BibTeX

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

Arbor

Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.

GPU
High performance computing
Neural network
+ 4

C++
AGS Script
Python
+ 8

AROSICS

AROSICS is an automated and robust open-source image co-registration software for multi-sensor satellite data.

Earth & Environment
Fourier Shift Theorem
Geometric Pre-processing
+ 8

Python
Makefile
Shell

122

atoMEC

atoMEC is a python-based average-atom code for simulations of high energy density phenomena such as in warm dense matter. It is designed as an open-source and modular python package.

Matter

Python
Shell

BioAutoML - Democratizing Machine Learning in Life Sciences

BioAutoML automatically runs an end-to-end ML pipeline that can be effectively employed by non-experts. BioAutoML does not require specialized human assistance, i.e., it only needs a training dataset of biological sequences (FASTA files) to perform an end-to-end ML experiment.

Artificial Intelligence
Big data
BioAutoML
+ 3

Jupyter Notebook
Python

BlenderProc

A procedural Blender pipeline for photorealistic training image generation

Blender
Dataset creation
Indoor Scene
+ 4

Python
TeX

BrainPrint

Our BrainPrint tools provide shape descriptors of neuroanatomical structures and require a FreeSurfer or FastSurfer segmentation as a pre-processing step. BrainPrint is based on “ShapeDNA” a spectral shape descriptor.

Data analysis
MRI
open source
+ 1

Python

113