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1-12 of 48
Cover image for QUAST

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

  • Data Visualization
  • FAIR Software
  • Genome assembly
  • + 4
  • AMPL
  • C++
  • Python
  • + 12
4
10240
Cover image for ComplexHeatmap

ComplexHeatmap

Complex heatmaps are efficient in visualizing associations between different sources of data sets and revealing potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

  • bioconductor
  • Clustering
  • Data Science
  • + 3
  • R
  • CSS
1
8509
Cover image for maftools

maftools

maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies

  • cancer
  • Classification
  • Data analysis
  • + 14
  • R
  • C
  • CSS
1
3559
Cover image for anvi'o

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

  • Data analysis
  • Data Visualization
  • Metagenomics
  • + 4
  • Python
  • JavaScript
  • HTML
  • + 5
6
2274
Cover image for KeY

KeY

KeY is a deductive verification system for Java programs

  • Deductive Verification
  • First-Order Logic
  • Formal Verification
  • + 3
  • Java
  • HTML
  • ANTLR
  • + 15
30
1020
Cover image for JPlag

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

  • Automated Obfuscation Attack
  • Collusion Detection
  • Data analysis
  • + 9
  • Java
  • ANTLR
  • Vue
  • + 16
9
540
Cover image for KeYmaera X

KeYmaera X

An aXiomatic Tactical Theorem Prover for Hybrid Systems

  • Axiom
  • Differential Dynamic Logic
  • Hybrid Systems
  • + 3
  • Scala
  • JavaScript
  • Mathematica
  • + 7
16
370
Cover image for CPlantBox

CPlantBox

CPlantBox is a functional-structural plant-soil modelling framework. It simulated the 3D architecture of a plant, coupled carbon and water flow within the plant, water flow and solute transport in a 3D dynamic soil, as well as water and nutrient uptake, and rhizodeposition.

  • C++
  • FSPM
  • functional-structural soil-plant model
  • + 2
  • Python
  • C++
  • CMake
  • + 3
9
309
Cover image for EnrichedHeatmap

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 2
  • R
  • CSS
  • C++
1
205
Cover image for simplifyEnrichment

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

  • Data analysis
  • Data Visualization
  • FAIR Data
  • + 3
  • R
  • CSS
1
184
Cover image for InteractiveComplexHeatmap

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.

  • Data analysis
  • Data Science
  • Data Visualization
  • + 3
  • R
  • JavaScript
  • CSS
1
169
Cover image for VarFish

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

  • Annotation
  • Data analysis
  • Health
  • + 1
  • Python
  • Vue
  • TypeScript
  • + 9
14
50