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HIFIS Software Spotlights

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Logo for FastSurfer

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

  • Data analysis
  • Deep Learning
  • Image processing
  • + 3
  • Python
  • Jupyter Notebook
  • Shell
  • + 1
10
259
Logo for CellDetection

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

  • cell counting
  • cell detection
  • cell segmentation
  • + 9
  • Python
  • Dockerfile
1
188
Logo for DL4PuDe

DL4PuDe

DL4PuDe is an AI-based framework that automatically detects pushing behavior in crowd videos, leading to a better understanding of pushing dynamics. This knowledge is crucial for better crowd management strategies and better design of public places, making public places more comfortable and safer.

  • Artificial Intelligence
  • Crowd Management
  • Deep Learning
  • + 3
  • Jupyter Notebook
  • Python
  • Cuda
  • + 2
3
9
Logo for Batchgenerators

Batchgenerators

  • 2D
  • 3D
  • data augmentation
  • + 3
  • Jupyter Notebook
  • Python
  • Makefile
0
0

Computer Vision Experimentation Frameworks - Generalized-YOLOv5

  • biomedical image analysis
  • Deep Learning
  • natural image analysis
  • + 4
  • Python
  • Shell
  • Dockerfile
0
0

Computer Vision Experimentation Frameworks - Image Classification

  • Classification
  • Deep Learning
  • out-of-the-box
  • + 2
  • Python
0
0

Computer Vision Experimentation Frameworks - Semantic Segmentation

  • Deep Learning
  • semantic segmentation
  • Python
0
0
Logo for DeepTrees🌳

DeepTrees🌳

Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch

  • Deep Learning
  • Earth & Environment
  • open source
  • + 3
  • Jupyter Notebook
  • Python
  • Shell
  • + 1
1
0
Logo for Lightning UQ Box

Lightning UQ Box

The lightning-uq-box is a PyTorch library that provides various Uncertainty Quantification (UQ) techniques for modern neural network architectures.

  • Deep Learning
  • python
  • uncertainty quantification
  • Python
0
0
Logo for PickYOLO

PickYOLO

PickYOLO

  • cryo electron tomography
  • Deep Learning
  • object detection
  • + 5
  • Python
0
0