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1-8 of 8

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

cell counting
cell detection
cell segmentation
+ 9

Python
Dockerfile

CICMoD - A Climate Index Collection based on Model Data

The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.

Earth & Environment
FAIR Data
Image processing
+ 1

Jupyter Notebook
Python
Shell
+ 1

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

Data analysis
Deep Learning
Image processing
+ 3

Jupyter Notebook
Python
Shell
+ 1

157

Kaapana

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

data managment
Federated Learning
Image processing
+ 2

Python
Shell
Vue
+ 12

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

Calibration
Correction
Crowd
+ 12

C++
Python
CMake
+ 2

396

PtyLab.m/py/jl

A cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography

computational physics
Data analysis
Data Visualization
+ 10

Jupyter Notebook
Python

ukis-csmask

UKIS Cloud Shadow MASK (ukis-csmask) package masks clouds and cloud shadows in Sentinel-2, Landsat-9, Landsat-8, Landsat-7 and Landsat-5 images. Masking is performed with a pre-trained convolution neural network. It is fast and works directly on Level-1C data (no atmospheric correction required).

Earth & Environment
Image processing
python
+ 1

Python

XDibias

XDibias is a modular image analysis software system for processing and analyzing earth oberservation imagery. XDibias is developed at the DLR-IMF (Remote Sensing Technologies Institute) and the former Institute for Optoelectronics since the 1980s and a main software-knowledge repository of IMF.

2D images
Earth & Environment
Image processing