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HIFIS Software Spotlights

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1-12 of 71

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

Data Visualization
FAIR Software
Genome assembly
+ 4

AMPL
C++
Python
+ 12

9313

ETHOS.FINE - Framework for Integrated Energy System Assessment

ETHOS.FINE provides a framework for modeling, optimizing and assessing energy systems. Systems with multiple regions, commodities and time steps can be modeled. Target of the optimization is the minimization of the total annual cost while considering technical and environmental constraints.

Energy
Energy planning
ESD
+ 6

Python
Dockerfile

789

MIRP

MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.

Medical Image Processing
python
radiomics

Python
Jupyter Notebook
R
+ 2

204

AROSICS

AROSICS is an automated and robust open-source image co-registration software for multi-sensor satellite data.

Earth & Environment
Fourier Shift Theorem
Geometric Pre-processing
+ 8

Python
Makefile
Shell

182

pycomlink

A python toolbox for deriving rainfall information from commercial microwave link (CML) data.

precipitation estimation
python
rainfall
+ 2

Jupyter Notebook
Python

124

GSTools

GSTools is a Python-based software suite for solving a wide range of geostatistical problems. GSTools provides methods for generating different classes of correlated random fields; it can perform kriging, variogram estimation and much more.

covariance-model
geospatial
geostatistics
+ 7

Python
Cython

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Annotation
Data analysis
Health
+ 1

Python
Vue
TypeScript
+ 9

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

Data Visualization
FAIR Data
FAIR Software
+ 8

Python
HTML
JavaScript
+ 5

Copy-Paste Imputation (CPI) for Energy Time Series

This project provides a Python implementation of an imputation method for energy time series. The CPI method copies data blocks with similar characteristics and pastes them into gaps of the time series while preserving the total energy of each gap.

Earth & Environment
Energy
ESD
+ 2

Python

kramersmoyal

The Python package `kramersmoyal` provides functions to analyze stochastic drift-diffusion and discontinuous stochastic processes in observational and experimental data.

Data analysis
Drift-Diffusion
Energy
+ 5

Python
TeX

SeisBench: A toolbox for machine learning in seismology

SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.

Earth & Environment
GPU
Helmholtz AI
+ 4

Jupyter Notebook
Python

TetraX

TetraX is a package for finite-element-method (FEM) micromagnetic modeling with the aim of providing user-friendly and versatile micromagnetic workflows. Among other features, it allows to efficiently calculate spin-wave spectra in different magnetic systems of general geometries.

finite-element-method
magnetization dynamics
micromagnetic modeling
+ 4

Python
C
Cython