CPlantBox
CPlantBox is a functional-structural plant-soil modelling framework. It simulated the 3D architecture of a plant, coupled carbon and water flow within the plant, water flow and solute transport in a 3D dynamic soil, as well as water and nutrient uptake, and rhizodeposition.
Cite this software
Description
A plant’s development is strongly linked to the water and carbon flows in the soil–plant–atmosphere continuum. Climate change will alter the water and carbon cycles and will affect plant phenotypes. CPlantBox is a three-dimensional functional–structural soil-plant modelling framework that can simulate mechanistically and dynamically the feedback loops between a plant’s three-dimensional development and the water, solute and carbon flows in plant and soil. It is useful to evaluate the sustainability of (future) genotype–environment–management combinations. Among other things, it allows to predict carbon allocation under stress conditions, assess phenotype performance dynamically or assess management measures on SOM dynamics and soil carbon sequestration.
Participating organisations
Reference papers
- 1.Author(s): Mona Giraud, Samuel Le Gall, Moritz Harings, Mathieu Javaux, Daniel Leitner, Félicien Meunier, Youri Rothfuss, Dagmar van Dusschoten, Jan Vanderborght, Harry Vereecken, Guillaume Lobet, Andrea SchnepfPublished in in silico Plants by Oxford University Press (OUP) in 202310.1093/insilicoplants/diad009
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- 3.Author(s): Andrea Schnepf, Daniel Leitner, Magdalena Landl, Guillaume Lobet, Trung Hieu Mai, Shehan Morandage, Cheng Sheng, Mirjam Zörner, Jan Vanderborght, Harry VereeckenPublished in Annals of Botany by Oxford University Press (OUP) in 2018, page: 1033-105310.1093/aob/mcx221
- 4.Author(s): Daniel Leitner, Sabine Klepsch, Gernot Bodner, Andrea SchnepfPublished in Plant and Soil by Springer Science and Business Media LLC in 2010, page: 177-19210.1007/s11104-010-0284-7
Mentions
- 1.Author(s): Sathyanarayan Rao, Praveen RanganathPublished in Environmental Earth Sciences, Mitigation and Adaptation Strategies Against Climate Change in Natural Systems by Springer Nature Switzerland in 2025, page: 357-38210.1007/978-3-031-75968-0_19
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- 15.Author(s): Andrea Schnepf, Daniel Leitner, Sabine Klepsch, Sylvain Pellerin, Alain MollierPublished in Soil Biology, Phosphorus in Action by Springer Berlin Heidelberg in 2010, page: 113-13310.1007/978-3-642-15271-9_5
- 1.Author(s): Federico Magistri, Nived Chebrolu, Jens Behley, Cyrill StachnissPublished in 2021 IEEE International Conference on Robotics and Automation (ICRA) by IEEE in 2021, page: 13960-1396610.1109/icra48506.2021.9561356
- 2.Author(s): Wuping Zhang, Guofang Wang, Jiwan Han, Fuzhong Li, Qian Zhang, John DoonanPublished in 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) by IEEE in 2018, page: 134-14010.1109/pma.2018.8611587
- 3.Author(s): Xiaoran Zhou, Andrea Schnepf, Andre Lacointe, Jan Vanderborght, Daniel Leitner, Harry Vereecken, Guillaume LobetPublished in 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA) by IEEE in 2018, page: 147-15110.1109/pma.2018.8611617
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- 1.Author(s): Daniel Leitner, Andrea Schnepf, Jan VanderborghtPublished in Hydrology and Earth System Sciences by Copernicus GmbH in 2025, page: 1759-178210.5194/hess-29-1759-2025
- 2.Author(s): Guoding Chen, Ke Zhang, Yunping Li, Jin Feng, Thom BogaardPublished in Journal of Hydrology by Elsevier BV in 2025, page: 13322510.1016/j.jhydrol.2025.133225
- 3.Author(s): Jakub Šalagovič, Pieter Verboven, Maarten Hertog, Bram Van de Poel, Bart NicolaïPublished in Computers and Electronics in Agriculture by Elsevier BV in 2025, page: 11034610.1016/j.compag.2025.110346
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- 18.Author(s): Patrick J. Dunn, Leanne M. GilbertsonPublished in Environmental Science: Processes & Impacts by Royal Society of Chemistry (RSC) in 2025, page: 549-56210.1039/d4em00566j
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- 23.Author(s): Justin Miron, Andrew A. MillwardPublished in Arboriculture & Urban Forestry by International Society of Arboriculture in 2024, page: jauf.2024.00510.48044/jauf.2024.005
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- 25.Author(s): Roxane Bruhwyler, Nicolas De Cock, Pascal Brunet, Jonathan Leloux, Pierre Souquet, Etienne Perez, Etienne Drahi, Sebastian Dittmann, Frédéric LebeauPublished in Agroforestry Systems by Springer Science and Business Media LLC in 2024, page: 2747-276410.1007/s10457-024-01090-8
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- 28.Author(s): Ying Zhang, Shenghao Gu, Jianjun Du, Guanmin Huang, Jiawei Shi, Xianju Lu, Jinglu Wang, Wanneng Yang, Xinyu Guo, Chunjiang ZhaoPublished in Plant Biotechnology Journal by Wiley in 2024, page: 802-81810.1111/pbi.14244
- 29.Author(s): Hugo Storm, Sabine Julia Seidel, Lasse Klingbeil, Frank Ewert, Harry Vereecken, Wulf Amelung, Sven Behnke, Maren Bennewitz, Jan Börner, Thomas Döring, Juergen Gall, Anne-Katrin Mahlein, Chris McCool, Uwe Rascher, Stefan Wrobel, Andrea Schnepf, Cyrill Stachniss, Heiner KuhlmannPublished in European Journal of Agronomy by Elsevier BV in 2024, page: 12717810.1016/j.eja.2024.127178
- 30.Author(s): Tomáš Středa, Jana Hajzlerová, Jhonny Alba-Mejía, Ivana Jovanović, Nicole Frantová, Hana StředováPublished in Czech Journal of Genetics and Plant Breeding by Czech Academy of Agricultural Sciences in 2024, page: 181-21110.17221/57/2024-cjgpb
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- 32.Author(s): Aude Tixier, Romain L. Barnard, Christian Jeudy, Marion PrudentPublished in Plant and Soil by Springer Science and Business Media LLC in 2024, page: 1261-127710.1007/s11104-024-07139-y
- 33.Author(s): Yousef E M HamoudaPublished in Physical Communication by Elsevier BV in 2024, page: 10229010.1016/j.phycom.2024.102290
- 34.Author(s): Christos Mitsanis, William Hurst, Bedir TekinerdoganPublished in Computers and Electronics in Agriculture by Elsevier BV in 2024, page: 10873310.1016/j.compag.2024.108733
- 35.Author(s): Peng Yu, Chunhui Li, Meng Li, Xiaoming He, Danning Wang, Hongjie Li, Caroline Marcon, Yu Li, Sergio Perez-Limón, Xinping Chen, Manuel Delgado-Baquerizo, Robert Koller, Ralf Metzner, Dagmar van Dusschoten, Daniel Pflugfelder, Ljudmilla Borisjuk, Iaroslav Plutenko, Audrey Mahon, Marcio F. R. Resende, Silvio Salvi, Asegidew Akale, Mohanned Abdalla, Mutez Ali Ahmed, Felix Maximilian Bauer, Andrea Schnepf, Guillaume Lobet, Adrien Heymans, Kiran Suresh, Lukas Schreiber, Chloee M. McLaughlin, Chunjian Li, Manfred Mayer, Chris-Carolin Schön, Vivian Bernau, Nicolaus von Wirén, Ruairidh J. H. Sawers, Tianyu Wang, Frank HochholdingerPublished in Nature Genetics by Springer Science and Business Media LLC in 2024, page: 1245-125610.1038/s41588-024-01761-3
- 36.Author(s): Lukas Fichtl, Daniel Leitner, Andrea Schnepf, Dominik Schmidt, Katrin Kahlen, Matthias FriedelPublished in Plant Phenomics by Elsevier BV in 2024, page: 028010.34133/plantphenomics.0280
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- 39.Author(s): Hong Anh Nguyen, Pierre Martre, Clothilde Collet, Xavier Draye, Christophe Salon, Christian Jeudy, Renaud Rincent, Bertrand MullerPublished in Journal of Experimental Botany by Oxford University Press (OUP) in 2024, page: 2510-252610.1093/jxb/erae009
- 40.Author(s): Yalong Li, Guolin Yang, Yuliang Lin, Tianyu Zhao, Ruikai Duan, Haifeng LiPublished in Ecological Modelling by Elsevier BV in 2024, page: 11080810.1016/j.ecolmodel.2024.110808
- 41.Author(s): Juan C. Baca Cabrera, Jan Vanderborght, Valentin Couvreur, Dominik Behrend, Thomas Gaiser, Thuy Huu Nguyen, Guillaume LobetPublished in Plant Direct by Wiley in 202410.1002/pld3.582
- 42.Author(s): H.-J. Vogel, W. Amelung, C. Baum, M. Bonkowski, S. Blagodatsky, R. Grosch, M. Herbst, R. Kiese, S. Koch, M. Kuhwald, S. König, P. Leinweber, B. Lennartz, C. W. Müller, H. Pagel, M. C. Rillig, J. Rüschhoff, D. Russell, A. Schnepf, S. Schulz, N. Siebers, D. Vetterlein, C. Wachendorf, U. Weller, U. WollschlägerPublished in Biology and Fertility of Soils by Springer Science and Business Media LLC in 2024, page: 263-30610.1007/s00374-024-01802-3
- 43.Author(s): Jan Vanderborght, Daniel Leitner, Andrea Schnepf, Valentin Couvreur, Harry Vereecken, Mathieu JavauxPublished in Vadose Zone Journal by Wiley in 202310.1002/vzj2.20273
- 44.Author(s): Jan Graefe, Richard Pauwels, Michael BitterlichPublished in in silico Plants by Oxford University Press (OUP) in 202310.1093/insilicoplants/diad016
- 45.Author(s): Maximilian Rötzer, Alexander Prechtel, Nadja RayPublished in Frontiers in Soil Science by Frontiers Media SA in 202310.3389/fsoil.2023.1155889
- 46.Author(s): Andrew Mair, Lionel Dupuy, Mariya PtashnykPublished in Field Crops Research by Elsevier BV in 2023, page: 10900610.1016/j.fcr.2023.109006
- 47.Author(s): L. Turin Dickman, Alexandra K. Jonko, Rodman R. Linn, Ilkay Altintas, Adam L. Atchley, Andreas Bär, Adam D. Collins, Jean‐Luc Dupuy, Michael R. Gallagher, J. Kevin Hiers, Chad M. Hoffman, Sharon M. Hood, Matthew D. Hurteau, W. Matt Jolly, Alexander Josephson, E. Louise Loudermilk, Wu Ma, Sean T. Michaletz, Rachael H. Nolan, Joseph J. O'Brien, Russell A. Parsons, Raquel Partelli‐Feltrin, François Pimont, Víctor Resco de Dios, Joseph Restaino, Zachary J. Robbins, Karla A. Sartor, Emily Schultz‐Fellenz, Shawn P. Serbin, Sanna Sevanto, Jacquelyn K. Shuman, Carolyn H. Sieg, Nicholas S. Skowronski, David R. Weise, Molly Wright, Chonggang Xu, Marta Yebra, Nicolas YounesPublished in New Phytologist by Wiley in 2023, page: 952-97010.1111/nph.18770
- 48.Author(s): Xiao-Ran Zhou, Andrea Schnepf, Jan Vanderborght, Daniel Leitner, Harry Vereecken, Guillaume LobetPublished in in silico Plants by Oxford University Press (OUP) in 202310.1093/insilicoplants/diad012
- 49.Author(s): Pengpeng Zhang, Jingyao Huang, Yuntao Ma, Xiujuan Wang, Mengzhen Kang, Youhong SongPublished in Plant Phenomics by Elsevier BV in 2023, page: 009110.34133/plantphenomics.0091
- 50.Author(s): Natalie Orlowski, Michael Rinderer, Maren Dubbert, Natalie Ceperley, Markus Hrachowitz, Arthur Gessler, Youri Rothfuss, Matthias Sprenger, Ingo Heidbüchel, Angelika Kübert, Matthias Beyer, Giulia Zuecco, Colin McCarterPublished in Science of The Total Environment by Elsevier BV in 2023, page: 16351010.1016/j.scitotenv.2023.163510
- 1.Author(s): Marina Luciana Abrêu de MeloPublished by Universidade de São Paulo. Agência de Bibliotecas e Coleções Digitais10.11606/t.11.2024.tde-09092024-075727
- 2.Author(s): Bastiaan Mees van den HerikPublished by Utrecht University Library10.33540/2037
- 3.Author(s): Reinhard HemmerlingPublished by University Goettingen Repository10.53846/goediss-2543
- 1.Author(s): Dirk N. Baker, Mona Giraud, Jens Henrik Göbbert, Hanno Scharr, Morris Riedel, Ebba Þóra Hvannberg, Andrea SchnepfPublished by Cold Spring Harbor Laboratory in 202510.1101/2025.02.06.633870
- 2.Author(s): Bethany L Holland, Nicholas AM Monk, Richard H Clayton, Colin P OsbornePublished in 202510.1093/insilicoplants/diaf004
- 3.Author(s): Samuel LE GALL, Dagmar van Dusschoten, Adrian Lattacher, Mona Giraud, Moritz Harings, Paulina Deseano Diaz, Daniel Pflugfelder, Samir Alahmad, Lee Hickey, Ahmet Sircan, Ellen Kandeler, Guillaume Lobet, Andrea Schnepf, Holger Pagel, Christian Poll, Harry Vereecken, Mathieu Javaux, Youri RothfussPublished by Springer Science and Business Media LLC in 202510.21203/rs.3.rs-7411150/v1
- 4.Author(s): Tina Koehler, Yunhee Kim, Shu-Yin Tung, Adrien Heymans, Nicolas Tyborski, Franziska Steiner, Andreas J Wild, Johanna Pausch, Mutez A Ahmed, Hannah M SchneiderPublished in 202510.1093/aob/mcaf075
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- 7.Published in Plant Roots by Wiley in 2025, page: 71-12210.1002/9781118970621.ch3
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