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SeisBench: A toolbox for machine learning in seismology

SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.

Earth & Environment
GPU
Helmholtz AI
+ 4

Jupyter Notebook
Python

somesy

Somesy (software metadata sync) is a CLI tool to avoid messy software project metadata by keeping it in sync.

FAIR Software
python

Python

stream2segment

A Python library and command line application to download, process and visualize event-based seismic waveform segments, specifically designed to manage big volumes of data

Big data
data managment
Data Visualization
+ 5

Python
Jupyter Notebook
HTML
+ 1

TetraX

TetraX is a package for finite-element-method (FEM) micromagnetic modeling with the aim of providing user-friendly and versatile micromagnetic workflows. Among other features, it allows to efficiently calculate spin-wave spectra in different magnetic systems of general geometries.

finite-element-method
magnetization dynamics
micromagnetic modeling
+ 4

Python
C
Cython

Tigramite

Tigramite is a python package for causal inference with a focus on time series data. It allows to efficiently estimate causal graphs from high-dimensional time series datasets (causal discovery) and to use graphs for the estimation and prediction of direct, total, and mediated effects.

causal inference
python
time series analysis

Jupyter Notebook
Python

ukis-csmask

UKIS Cloud Shadow MASK (ukis-csmask) package masks clouds and cloud shadows in Sentinel-2, Landsat-9, Landsat-8, Landsat-7 and Landsat-5 images. Masking is performed with a pre-trained convolution neural network. It is fast and works directly on Level-1C data (no atmospheric correction required).

Earth & Environment
Image processing
python
+ 1

Python

UQTestFuns

A Python3 library of uncertainty quantification (UQ) test functions

Benchmark
python
Software Testing
+ 1

Python
TeX

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Annotation
Data analysis
Health
+ 1

Python
Vue
JavaScript
+ 8