All software

Mainzelliste

Mainzelliste is an extensible web-based pseudonymisation tool used for generating and managing the pseudonyms from identifying data which supports multiple ways of secure, error-tolerant record linkage.

Allpix Squared

Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.

Fastscape Toolbox

Fastscape is a set of open-source software components aimed at making landscape evolution models and topographic analysis algorithms readily accessible to a wide range of users.

Earth System Model Evaluation Tool (ESMValTool)

oemof.solph

oemof.solph is a model generator for energy system modelling and optimisation. It facilitates the formulation of (mixed-integer) linear programs from a generic graph-based structure, allowing to create multi-sector models on different levels of detail with user-defined time-resolution.

BlenderProc

A procedural Blender pipeline for photorealistic training image generation

MPTRAC

Massive-Parallel Trajectory Calculations (MPTRAC) is a Lagrangian particle dispersion model for the analysis of atmospheric transport processes in the free troposphere and stratosphere.

RiboDetector

RiboDetector is designed to rapidly and accurately detect rRNA sequences from metagenomic, metatranscriptomic, and ncRNA sequencing data. It has been optimized for use with both CPUs and GPUs. It outperforms existing software by delivering 10-50x faster runtime and ~10x fewer false classifications.

CiTYCHEM

The CiTYCHEM extension of the EPISODE dispersion model is designed for treating complex atmospheric chemistry in urban areas and improved representation of the near-field dispersion. Applications are urban air quality studies, environmental impact assessments and sector-specific emission studies.

KaGen - Communication-free Massively Distributed Graph Generators

Network generators help to provide synthethic instances with controllable parameters by algorithm developers and researchers. KaGen provides generators for a large variety of network models, which are communication-free by making use of pseudorandomization and divide-and-conquer schemes.

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...