Software

NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.

The instrumentation and measurement framework Score-P, together with analysis tools build on top of its output formats, provides insight into massively parallel HPC applications, their communication, synchronization, I/O, and scaling behaviour to pinpoint performance bottlenecks and their causes.

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.

CADET is a fast and accurate solver for a comprehensive model family of biotechnological processes. Applications include chromatography, filtration, crystallization, and fermentation. The open source software implements state-of-the-art mathematical algorithms and scientific computing techniques.

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.

A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.

The PEPC project (Pretty Efficient Parallel Coulomb Solver) is a public tree code that has been developed at Jülich Supercomputing Centre since the early 2000s. Our code is a non-recursive version of the Barnes-Hut algorithm, using a level-by-level approach to both tree construction and traversals.

Elephant (Electrophysiology Analysis Toolkit) is an open-source, community centered library for the analysis of electrophysiological data in the Python programming language.

DL4PuDe is an AI-based framework that automatically detects pushing behavior in crowd videos, leading to a better understanding of pushing dynamics. This knowledge is crucial for better crowd management strategies and better design of public places, making public places more comfortable and safer.