All software

Arbor

Arbor is a high-performance library for computational neuroscience simulations with multi-compartment, morphologically-detailed cells, from single cell models to very large networks. Arbor is written from the ground up to help neuroscientists effectively use contemporary and future HPC systems.

base-repo

Base-repo is a generic, domain-agnostic research data repository suitable to store and manage all kinds of research data. Its content is organized as DataResources, which consist of descriptive DataCite-compliant Metadata and one or more data elements, either stored as files or linked by reference.

CellDetection

An open-source Python package, offering advanced AI methods for the identification and segmentation of biomedical objects, such as cells, in image data. Includes trained models that work out-of-the-box for a wide range of use cases.

CICMoD - A Climate Index Collection based on Model Data

The software provides a consistent and comprehensive collection of climate indices typically used to describe Earth System dynamics and serves as a new benchmark data set. It allows users to develop new machine learning methods and to compare their results to existing methods in an objective way.

dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

deus

Damage and Exposure Update Service

Earth System Model Evaluation Tool (ESMValTool)

ESMValCore

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

FatSegNet

A fully automated deep learning pipeline for adipose tissue (visceral and subcutaneous) segmentation on abdominal Dixon MRI.

FSQC

This package provides quality assurance / quality control scripts for FastSurfer- or FreeSurfer-processed structural MRI data.

Heat

Heat is a flexible and seamless open-source software for high performance data analytics and machine learning. It provides highly optimized algorithms and data structures for tensor computations using CPUs, GPUs and distributed cluster systems on top of MPI.