HIFIS Software Spotlights

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1-12 of 57
Logo for QUAST

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

  • Data Visualization
  • FAIR Software
  • Genome assembly
  • + 4
  • AMPL
  • C++
  • Python
  • + 12
4
10763
Logo for anvi'o

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

  • Data analysis
  • Data Visualization
  • Metagenomics
  • + 4
  • Python
  • JavaScript
  • HTML
  • + 5
6
2360
Logo for KeY

KeY

KeY is a deductive verification system for Java programs

  • Deductive Verification
  • First-Order Logic
  • Formal Verification
  • + 3
  • Java
  • HTML
  • ANTLR
  • + 15
30
1031
Logo for JPlag

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

  • Automated Obfuscation Attack
  • Collusion Detection
  • Data analysis
  • + 9
  • Java
  • ANTLR
  • Vue
  • + 16
9
544

KeYmaera X

An aXiomatic Tactical Theorem Prover for Hybrid Systems

  • Axiom
  • Differential Dynamic Logic
  • Hybrid Systems
  • + 3
  • Scala
  • JavaScript
  • Mathematica
  • + 7
16
379
Logo for CryoGrid

CryoGrid

The CryoGrid Model Suite provides a set of numerical tools for simulating the thermal soil regime and the ice-water balance for permafrost and glaciers. Depending on the application needs different model tools are offered, characterized by different levels complexity and modularity.

  • Climate
  • Earth & Environment
  • Modeling
  • + 1
  • MATLAB
  • HTML
  • Mercury
  • + 2
8
257
Logo for ESMValCore

ESMValCore

  • Data analysis
  • Earth & Environment
  • FAIR Software
  • + 2
  • Python
  • Jupyter Notebook
  • HTML
  • + 5
46
113
Logo for MPTRAC

MPTRAC

Massive-Parallel Trajectory Calculations (MPTRAC) is a Lagrangian particle dispersion model for the analysis of atmospheric transport processes in the free troposphere and stratosphere.

  • Atmospheric science
  • Climate
  • Earth & Environment
  • + 6
  • C
  • Shell
  • HTML
  • + 3
9
63
Logo for VarFish

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

  • Annotation
  • Data analysis
  • Health
  • + 1
  • Python
  • Vue
  • TypeScript
  • + 9
14
52
Logo for Medical Imaging Interaction Toolkit (MITK)

Medical Imaging Interaction Toolkit (MITK)

A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.

  • Artificial Intelligence
  • C++
  • Data Visualization
  • + 7
  • C++
  • CMake
  • C
  • + 8
5
42
Logo for Aviator

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

  • Data Visualization
  • FAIR Data
  • FAIR Software
  • + 8
  • Python
  • HTML
  • JavaScript
  • + 5
6
37
Logo for MSS - Mission Support System

MSS - Mission Support System

For discussion of the possibilites of research flights, the Mission Support System (MSS) was developed. This software helps to review a big amount of metereological and model data by viewing the forecasted parameters of interest along possible regions of a proposed flight path.

  • Data Visualization
  • Earth & Environment
  • Flight Planning
  • + 2
  • Python
  • HTML
  • Shell
  • + 1
7
28