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109-120 of 137

openPMD-api

openPMD is an open meta-data schema that provides meaning and self-description for datasets in science and engineering. This library provides a reference API for openPMD data handling, supporting established I/O backends such as HDF5, ADIOS2, JSON and TOML from serial to MPI-parallel workflows.

ADIOS
data
file-format
+ 8

C++
Python
CMake
+ 4

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7

Potsdam Open-source Radio interferometry Tool (PORT)

PORT is a software package dedicated to the analysis of modern and historical Very Long Baseline Interferometry (VLBI) observations. It is utilized to perform the GFZ VLBI Analysis Center responsibilities, as well as state-of-the-art research in space geodesy, geophysics, and astrometry.

Astrometry
Earth orientation parameters
Reference frames
+ 1

Python
MATLAB
Fortran
+ 2

ProFASi

PROFASI (PROtein Folding and Aggregation SImulator) is a C++ package for HPC Monte Carlo simulations of protein folding and aggregation. It provides an all atom, implicit solvent force field, and a set of tools to perform Monte Carlo simulations. A plugin mechanism allows for user extensions.

Monte Carlo
Peptide Aggregation
Protein folding
+ 2

C++
CMake
Python
+ 1

RAFCON

RAFCON uses hierarchical state machines, featuring concurrent state execution, to represent robot programs. It ships with a graphical user interface supporting the creation of state machines and contains IDE like debugging mechanisms.

Aeronautics, Space and Transport
collaboration
robotics
+ 2

Python
SCSS
Shell
+ 1

RAYX

Optical Simulation Software for Synchrotron Radiation

C++
open source
python
+ 2

C++
Python
CSS
+ 7

RCE

RCE is a distributed integration environment for scientists and engineers to analyze, optimize, and design complex systems like aircraft, ships, or satellites.

Aeronautics, Space and Transport
collaboration
Distributed Execution
+ 3

Java
HTML
Gherkin
+ 8

ReStore

ReStore for MPI programs enables scalable in-memory recovery of data after process failures via an appropriate data distribution and replication. It supports shrinking and replacing recovery-schemes and is substantially faster than parallel file system based approaches.

Distributed Memory Algorithms
Fault-Tolerance
High performance computing

C++
R
CMake
+ 2

RTLola Frontend

A frontend to parse and analyze RTLola specifications

Formal Methods
Frontend
monitoring
+ 2

Rust
Shell

RTLola Interpreter

An interpreter for RTLola specifications

Formal Methods
Interpreter
monitoring
+ 1

Rust
Python
Shell

S2Downloader

The S2Downloader allows to download Sentinel-2 L2A data from the cost-free element84 AWS Amazon server. It specifically serves the purpose to download data for user-defined area of interests (AOI). It offers several parameters for filtering the data, can stack the results, mosaic and crop to AOI.

open source
python
Remote sensing
+ 1

Python
Makefile
Shell

SampleDB

SampleDB is a web-based electronic lab notebook with a focus on sample and measurement metadata. With SampleDB, you can track each step in the sample lifecycle and its schema system allows you to define exactly what metadata should be stored for each process, from a simple check box to time series.

Electronic Lab Notebook
metadata
Research Data Management

Python
HTML
JavaScript
+ 4