All software
Chemotion ELN
Chemotion ELN is an Open Source electronic lab notebook (ELN) for scientists working in chemistry and neighboring disciplines, developed mainly at Karlsruhe Institute of Technology (KIT). The web-based application allows the acquisition, management, storage, processing, and sharing of research data.
- Chemistry
- Electronic Lab Notebook
- Experimental Sciences
- + 2
- JavaScript
- Ruby
- SCSS
- + 5
VarFish
VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...
- Annotation
- Data analysis
- Health
- + 1
- Python
- Vue
- TypeScript
- + 9
NetworKit
NetworKit is a growing open-source toolkit for large-scale network analysis. Its aim is to provide tools for the analysis of large networks in the size range from thousands to billions of edges. It implements efficient graph algorithms, many of them parallel to utilize multicore architectures.
- algorithm engineering
- Graph algorithms
- Network Analysis
- C++
- Cython
- Python
- + 9
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
Medical Imaging Interaction Toolkit (MITK)
A free and open-source software for the development of interactive medical image processing applications. MITK provides a powerful and free application called the MITK Workbench, which allows users to view, process, and segment medical images.
- Artificial Intelligence
- C++
- Data Visualization
- + 7
- C++
- CMake
- C
- + 8
HilbertCurve
Hilbert curve is a type of space-filling curves that fold one dimensional axis into a two dimensional space, but with still preserves the locality. This package aims to provide an easy and flexible way to visualize data through Hilbert curve.
- Data analysis
- Data Science
- Data Visualization
- + 3
- R
- C++
- CSS
- + 1
spacemake
Processing and analysis of large-scale spatial transcriptomics data
- Pipeline
- snakemake
- Spatial transcriptomics
- Python
- Jupyter Notebook
- Shell
- + 3
UltraMassExplorer (UME)
Natural organic matter is the most complex chemical mixture on our planet. UME is an open access, browser-based tool that allows efficient, interactive, transparent, and reproducible exploration and evaluation of ultrahigh resolution mass spectra of complex organic matter.
- analytical chemistry
- Carbon cycle
- Data analysis
- + 7
- R
- BibTeX
- CSS
ClimSight
ClimSight is a tool designed to make localized climate information both accessible and actionable. By integrating large language models (LLMs) with geographical and climate data, ClimSight provides users with tailored, location-specific insights essential for a variety of applications.
- Climate
- climate modelling
- ClimSight
- + 1
- Python
- TypeScript
- CSS
- + 3
LiberTEM
LiberTEM is an open source platform for high-throughput distributed processing of large-scale binary data sets and live data streams using a stream-based programming model. The current focus is pixelated scanning transmission electron microscopy (4DSTEM) and scanning electron beam diffraction data.
- 4D STEM
- electron microscopy
- high-throughput
- + 3
- Python
- TypeScript
- JavaScript
- + 6
CosmoScout VR
CosmoScout VR is an open source virtual Solar System, primarily aimed at interactive visualization of huge remote sensing products in conjunction with large-scale simulation data.
- Aeronautics, Space and Transport
- Data Visualization
- solar system
- + 1
- C++
- GLSL
- JavaScript
- + 7
simona
This package implements infrastructures for ontology analysis by offering efficient data structures, fast ontology traversal methods, and elegant visualizations. It provides a robust toolbox supporting over 70 methods for semantic similarity analysis.
- Data analysis
- Data Visualization
- FAIR Data
- + 3
- R
- C++
- JavaScript
- + 3