All software
quark
is a software package to support the mapping of combinatorial optimization problems to quantum computing interfaces via QUBO and Ising problems.
- Discrete Optimization
- Ising Problem
- Quantum Annealing
- + 2
- Python
- Shell
Rankings Reloaded
Rankings Reloaded is an open-source toolkit for robust and accurate benchmark visualization and ranking. It is an out-of-the-box and open-source framework for analyzing and visualizing algorithm results in an accurate way. It uses challengeR and brings advantages of it with user-friendly interface.
- Data analysis
- Data Visualization
- Information
- + 1
- R
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 4
- C++
- Python
- CSS
- + 8
scanpy
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
- bioinformatics
- Data analysis
- python
- Python
- R
SciTS
A tool to benchmark Time-series on different databases.
- Benchmark
- Benchmarking
- database
- + 3
- Jupyter Notebook
- HTML
- C#
- + 2
sdaas
Simple machine learning tool in Python computing an anomaly score of seismic waveform amplitudes. By using a pre-trained Isolation forest model, the program can be used for identification of outliers in semismic data, assign robustness weights, or check instruments and metadata errors
- Machine learning
- outlier detection
- seismic metadata
- + 2
- Python
Trimmomatic
Trimmomatic is a command line tool that performs a variety of functions for Illumina paired-end and single-end sequencing data, including sequence trimming and adapter removal. It is a flexible and efficient NGS preprocessing tool, which greatly improves downstream applications.
- Earth & Environment
- Illumina
- NGS
- Java
- Dockerfile
TrixiParticles.jl
Particle-based multiphysics simulations in Julia
- CFD
- Earth & Environment
- Information
- + 2
- Julia
UrMoAC
UrMoAC is a tool for computing accessibility measures, supporting aggregation, variable limits, and intermodality.
- accessibility measures
- land-use indicators
- Java
- Python
- Batchfile
VASCA
The VAriable Source Cluster Analysis (VASCA) is an astronomy pipeline for time-variable sources.
- Astronomy
- catalogue
- Data analysis
- + 6
- Jupyter Notebook
- Python
WESkit
An implementation of the Workflow Execution Service API of the Global Alliance for Genomic Health (GA4GH), with the aim to be reliable for production purposes and robust and scalable.
- GA4GH
- Workflow Execution
wps-command-line-tool-repository
A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.
- Earth & Environment
- Remote Procedure Calls
- Web Processing Service
- Java
- Scheme
- Python
- + 3