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Prospective Monitoring and Management - App (PIA)

PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS

Data Collection
Digital Infrastructure
epidemiology
+ 5

TypeScript
HTML
JavaScript
+ 9

AiiDA-Spirit

AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).

data managment
Data Visualization
FAIR Data
+ 5

JavaScript
Python
HTML
+ 1

pkgndep

A new metric named 'dependency heaviness' is proposed that measures the number of additional dependency packages that a parent package brings to its child package and are unique to the dependency packages imported by all other parents.

Data analysis
Data Visualization
FAIR Data
+ 3

R
HTML
JavaScript
+ 1

cupla

cupla is a simple user interface for the platform-independent parallel kernel acceleration library alpaka. It follows a similar concept as the NVIDIA® CUDA® API by providing a software layer to manage accelerator devices. alpaka is used as a backend for cupla.

C++
heterogeneous computing
High performance computing
+ 3

C++
CMake
Shell
+ 5

dCache

dCache is a system for storing and retrieving huge amounts of scientific data, distributed among a large number of heterogeneous server nodes, under a single virtual filesystem tree with a variety of standard access methods including NFSv4.1 (pNFS), FTP, WebDav and xroot.

data managment
FAIR Data

Java
JavaScript
XSLT
+ 14

mallocMC

This project provides a framework for fast memory managers on many core accelerators. It is based on alpaka to run on many different accelerators and implements the ScatterAlloc algorithm.

CUDA
heterogeneous computing
High performance computing
+ 2

C++
CMake
Shell
+ 4

Chemotion ELN

Chemotion ELN is an Open Source electronic lab notebook (ELN) for scientists working in chemistry and colleagues from neighboring disciplines, developed and updated at KIT. The web-based application allows the acquisition, management, storage, processing, and sharing of research data.

Chemistry
Electronic Lab Notebook
Experimental Sciences
+ 2

JavaScript
Ruby
SCSS
+ 5

eGSIM

A Python library and web application to select and test Ground Motion models. Online at: https://egsim.gfz-potsdam.de

Flatfile
Geohazards
Ground motion model
+ 1

Python
HTML
JavaScript
+ 1

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

Data Visualization
MRI
open source
+ 1

Jupyter Notebook
HTML
MATLAB
+ 5

JURI

JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.

JavaScript
HTML
CSS
+ 5

NESTML

NESTML is a domain-specific language for neuron and synapse models. It combines an easy to understand, yet powerful syntax with good simulation performance by means of code generation.

Modelling
Simulation
spiking neural networks

Python
Jinja
ANTLR
+ 4

PiGx

PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.

HTML
Python
R
+ 7