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JURASSIC

The Juelich Rapid Spectral Simulation Code (JURASSIC) is a fast infrared radiative transfer model for the analysis of atmospheric remote sensing measurements.

Atmospheric science
Climate
Earth & Environment
+ 5

C
Shell
Makefile
+ 1

215

MIRP

MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.

Medical Image Processing
python
radiomics

Python
Jupyter Notebook
R
+ 2

199

CoMOLA

CoMOLA is a python tool for optimal spatial allocation of land uses. The tool creates optimal land-use maps for up to four objectives. It takes into account constraints and can be coupled with external models to evaluate different objectives (e.g. ecosystem services/biodiversity models)

land-use allocation
multi-objective optimization
NSGA-II

Python
R

177

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

Data analysis
Data Visualization
FAIR Data
+ 2

176

AROSICS

AROSICS is an automated and robust open-source image co-registration software for multi-sensor satellite data.

Earth & Environment
Fourier Shift Theorem
Geometric Pre-processing
+ 8

Python
Makefile
Shell

172

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

Data analysis
Deep Learning
Image processing
+ 3

Jupyter Notebook
Python
Shell
+ 1

157

GAIA

A framework to study the themo-chemical evolution of rocky and icy bodies (planets, moons, and planetoids) in the solar system and beyond.

CFD
Computational Fluid Dynamics
Earth & Environment
+ 4

155

KaHyPar

KaHyPar is a fast, high-quality, and scalable algorithm for partitioning graphs and hypergraphs with billions of edges. It finds applications in minimizing communication costs for distributed (hyper)graph computations, quantum circuit simulations, storage sharding in databases, and VLSI design.

Clustering
Data analysis
Graphs
+ 8

151

openCARP

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

computational cardiology
electrophysiology
Health
+ 2

C++
Python
C
+ 2

143

GOLEM

GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework

Earth & Environment
Multiphysics of porous fractured rocks
reservoir behaviour and induced seismicity
+ 1

C++
SWIG
Assembly
+ 5

128

Vitruvius

View-based System Development on Consistent Models

Consistency
Model-driven development
Model transformations
+ 1

Java
Xtend

124

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

Data analysis
Data Visualization
FAIR Data
+ 3

123