All software
me-compute
me-compute: a Python software to download events and data from FDSN web services and compute their energy magnitude (Me)
- energy magnitude
- FDSN
- seismic data
- + 1
- Python
- HTML
MemBrain v2
MemBrain v2 aims to facilitate the analysis of membranes in cryo-electron tomography data. It consists of the components membrain-seg for membrane segmentation, membrain-pick for membrane protein localization, and membrain-stats for the extraction of membrane-based metrics.
- Python
MemRBC
MemRBC is an R package for spectral modeling of red blood cell shapes in R. It is the result of open science research, demonstrating the idea of hi-level apps with metadata creation in a lightweight obejct oriented approach.
- cell shape
- Helfrich
- R
- + 5
- R
- JavaScript
- C++
- + 1
MERCY
The marine mercury cycling model MERCY v2.0 is a chemistry transport and bio-accumulation model for mercury (Hg). It implements all known processes for marine (pelagic and benthic) Hg cycling into a biogeochemical 3D ocean-ecosystem model. https://gmd.copernicus.org/preprints/gmd-2021-427/
- Bioaccumulation
- Chemistry Transport Modeling
- Earth & Environment
- + 6
Merkle-DAG-Matlab
Merkle-Directed Acyclic Graph (DAG) in MATLAB
- Cryptographic-hash-functions
- Graph-algorithms-and-data-sturcture
- matlab
- + 1
- MATLAB
metadeconfoundR
Using non-parametric tests, naive associations between omics features and metadata in cross-sectional data-sets are detected. In a second step, confounding effects between metadata associated to the same omics feature are detected and labeled using nested post-hoc model comparison tests.
- R
MetaStore
MetaStore is a research data repository software for storing metadata documents and schemas. Quality and consistency are ensured by associating and validating each document against a schema. It supports JSON and XML.
- data managment
- FAIR Data
- metadata
- + 1
- Java
- JavaScript
- HTML
- + 3
methylKit
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.
- R
- C++
- TeX
Metrics Reloaded
The mission of Metrics Reloaded toolkit is to guide researchers in the selection of appropriate performance metrics for biomedical image analysis problems and to provide a comprehensive online resource for metric-related information and pitfalls.
- Algorithm Validation
- Problem-Aware Metric Selection
- Problem Fingerprint
mHM
The mesoscale Hydrologic Model (mHM) is a well established hydrological model used by the scientific community. It is under active development with dozens of contributors and has an open community always interested in discussions.
- Earth & Environment
- mesoscale hydrologic model
- mHM
- + 2
- AGS Script
- Fortran Free Form
- Python
- + 2
micofam
MiCoFaM (Micromechanical Composite Fatigue Modeler) is a model generator for creating representative volume elements (RVEs) consisting of fibre, interface and matrix phases for a given fiber volume content with randomized fiber placements. The application is provided as an ABAQUS plug-in.
- Modeling
- python
- Simulation
micromechanics-indentationGUI
Graphical User Interface (GUI) software for analyzing nanoindentation experimental data
- Data analysis
- Data Visualization
- Energy
- + 5
- Python