All software
FishInspector
The software FishInspector provides automatic feature detections in images of zebrafish embryos (body size, eye size, pigmentation). It is Matlab-based and provided as a Windows executable (no matlab installation needed).
- Earth & Environment
- image feature detection
- pattern recognition
- + 1
- MATLAB
- HTML
GR Framework
GR is a framework for cross-platform visualization applications for interactive plots or live displays of instruments. GR can easily be embedded in Qt applications or Jupyter notebooks. It can produce publication quality plots and provides interfaces for C, Julia, Python, Rust and JS.
- C++
- Data analysis
- Data Visualization
- + 3
- C
- C++
- CMake
- + 15
Habitat Sampler
Habitat Sampler (HaSa, Community Version), an innovative tool that autonomously generates representative reference samples for predictive modelling of surface class probabilities.
- autonomous sampling
- Earth & Environment
- image classification
- + 1
- HTML
- R
- Shell
ILTpy
ILTpy is a python library for performing regularized inversion of one-dimensional or multi-dimensional data without non-negativity constraint. Primary applications include magnetic resonance (NMR, EPR), and electrochemical impedance spectroscopy (distribution of relaxation times; DRT).
- Distribution of Relaxation times
- DRT
- EPR
- + 7
- Python
- HTML
InteractiveVis
The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.
- Data Visualization
- MRI
- open source
- + 1
- Jupyter Notebook
- HTML
- MATLAB
- + 5
JURI
JURI (Jülich Reporting Interface) provides a template-driven fully client-based web framework to visualise data lists and associated data graphs.
- JavaScript
- HTML
- CSS
- + 5
me-compute
me-compute: a Python software to download events and data from FDSN web services and compute their energy magnitude (Me)
- energy magnitude
- FDSN
- seismic data
- + 1
- Python
- HTML
novoSpaRc
novoSpaRc predicts locations of single cells in space by solely using single-cell RNA sequencing data. An existing reference database of marker genes is not required, but significantly enhances performance if available.
- Data analysis
- open source
- single-cell RNA-seq
- Jupyter Notebook
- HTML
- Python
oidc-agent
oidc-agent is an OpenID Connect tool suite designed to simplify authentication processes for command-line applications and workflows that require access to resources protected by OIDC. It provides a secure, but user-friendly way to manage tokens on the command-line.
- AAI
- command-line
- OIDC
- + 2
- C
- C++
- Makefile
- + 4
PiGx
PiGx is a collection of genomics pipelines. All pipelines are easily configured with a simple sample sheet and a descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.
- HTML
- Python
- R
- + 7
RAYX
Optical Simulation Software for Synchrotron Radiation
- C++
- open source
- python
- + 2
- C++
- Python
- CSS
- + 8
RO Crate Java
A Java library to create and modify RO-Crates. The aim of this implementation is to not require too deep knowledge of the specification, and avoiding crates which do not fully comply to the specification, at the same time.
- data managment
- FAIR Data
- FAIR Software
- + 3
- Java
- HTML
- FreeMarker