All software

maftools

maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies

circlize

Circular layout is an efficient way for the visualization of huge amounts of information. The circlize package provides an implementation of circular layout generation in R.

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

ODV

Ocean Data View (ODV) - Interactive exploration, analysis and visualization of oceanographic and other environmental data.

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

PeTrack

PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With a stereo camera also markerless tracking is possible.

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

Earth System Model Evaluation Tool (ESMValTool)

EnrichedHeatmap

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.

KaHyPar

KaHyPar is a fast, high-quality, and scalable algorithm for partitioning graphs and hypergraphs with billions of edges. It finds applications in minimizing communication costs for distributed (hyper)graph computations, quantum circuit simulations, storage sharding in databases, and VLSI design.

simplifyEnrichment

A new clustering algorithm, "binary cut", for clustering similarity matrices of functional terms is implemeted in this package. It also provides functions for visualizing, summarizing and comparing the clusterings.

InteractiveComplexHeatmap

InteractiveComplexHeatmap is an R package that converts static heatmaps produced from ComplexHeatmap package into an interactive Shiny app only with one extra line of code.