All software
QUAST
QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.
- Data Visualization
- FAIR Software
- Genome assembly
- + 4
- AMPL
- C++
- Python
- + 12
PeTrack
PeTrack (Pedestrian Tracking) automatically extracts accurate pedestrian trajectories from video recordings (calibration, recognition, tracking). Individual codes enable personalized trajectories with static information of each participant. With ML techniques also markerless tracking is possible.
- Annotation
- Calibration
- Computer Vision
- + 18
- C++
- Python
- CMake
- + 2
Earth System Model Evaluation Tool (ESMValTool)
- climate modelling
- Data analysis
- Earth & Environment
- + 4
- Python
- NCL
- R
- + 7
ESMValCore
- Data analysis
- Earth & Environment
- FAIR Software
- + 2
- Python
- Jupyter Notebook
- HTML
- + 4
Kadi4Mat
Kadi4Mat is a generic and open source virtual research environment.
- Aeronautics, Space and Transport
- Earth & Environment
- Electronic Lab Notebook
- + 9
- Python
- Vue
- HTML
- + 2
CiTYCHEM
The CiTYCHEM extension of the EPISODE dispersion model is designed for treating complex atmospheric chemistry in urban areas and improved representation of the near-field dispersion. Applications are urban air quality studies, environmental impact assessments and sector-specific emission studies.
- Air Pollution
- Air quality
- Earth & Environment
- + 6
Aviator
Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.
- Data Visualization
- FAIR Data
- FAIR Software
- + 8
- Python
- HTML
- JavaScript
- + 5
Representation of Protein Entities (RoPE)
RoPE clusters related protein structures on torsion angles to derive an interpretable, mathematical conformational space of that protein, revealing relevant protein dynamics.
- C++
- Data analysis
- Data Visualization
- + 4
- C++
- C
- GLSL
- + 4
Spin-Dependent 5th Force Limits
This is an open research software and data platform for compiling, standardizing, and visualizing constraints on spin-dependent exotic interactions beyond the Standard Model. It provides a unified, reusable, and citable framework for comparing results across experiments and parameter spaces.
- Beyond Standard Model physics
- Data compilation
- FAIR Software
- + 4
- Jupyter Notebook
- MATLAB
- HTML
- + 2
perun
perun is a Python package that calculates the energy consumption of Python scripts by sampling usage statistics from hardware interfaces. It can handle MPI applications, gather data from hundreds of nodes, and accumulate it efficiently.
- Earth & Environment
- Energy
- FAIR Software
- + 2
- Python
ESM-Tools
ESM-Tools is a toolbox to assist you in running climate and Earth System Model simulations.
- Earth & Environment
- Earth System Modelling
- FAIR Software
- + 11
- Shell
- Python
- Fortran
- + 5
CUAS-MPI
CUAS-MPI is the MPI-parallel implementation of the confined-unconfined aquifer system model for subglacial hydrology. The model uses a single-layer equivalent porous medium approach and solves a two-dimensional Darcy-type groundwater flow equation.
- C++
- Earth & Environment
- FAIR Software
- + 4
- C++
- CMake
- C
- + 1