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HIFIS Software Spotlights

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1-12 of 13

maftools

maftools is a comprehensive toolkit for processing somatic variants from cohort-based cancer genomic studies

cancer
Classification
Data analysis
+ 14

3166

matRad

matRad is a dose calculation and inverse treatment planning toolkit for radiotherapy research and education written in Matlab.

Health
Medical Physics
Particle Therapy
+ 2

MATLAB
TeX
C++

223

openCARP

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

computational cardiology
electrophysiology
Health
+ 2

C++
Python
C
+ 2

143

CiTYCHEM

The CiTYCHEM extension of the EPISODE dispersion model is designed for treating complex atmospheric chemistry in urban areas and improved representation of the near-field dispersion. Applications are urban air quality studies, environmental impact assessments and sector-specific emission studies.

Air Pollution
Air quality
Earth & Environment
+ 6

VarFish

VarFish is a user-friendly web application for the quality control, filtering, prioritization, analysis, and user-based annotation of DNA variant data with a focus on rare disease genetics. It is capable of processing variant call files with single or multiple samples. ...

Annotation
Data analysis
Health
+ 1

Python
Vue
TypeScript
+ 9

Aviator

Aviator is a web service facilitating easy surveillance of scientific online tools. It currently checks more than 13,000 websites twice a day for availability and saves numerous features (response time, RAM usage security certificates, analytic tools / trackers, etc.) in a FAIR data repository.

Data Visualization
FAIR Data
FAIR Software
+ 8

Python
HTML
JavaScript
+ 5

Propulate

An asynchronous evolutionary optimization algorithm and software package for global optimization and hyperparameter search on high-performance computers.

Aeronautics, Space and Transport
Earth & Environment
Energy
+ 9

Python

HELIPORT

The guidance system HELIPORT aims to make the entire life cycle of a scientific project according to the FAIR principles. In particular, our data management solution deals with the areas from the generation of the data to the publication of primary research data, the workflows and results.

data managment
Earth & Environment
Energy
+ 10

Python
HTML
JavaScript
+ 2

RadPlanBio

RadiationDosePlan- Image/Biomarker-Outcome-platform (RPB) is a collection of open source software systems integrated via portal to deliver a core software infrastructure necessary to support the operation of non-commercial trials unit.

Clinical-Research
Health
Radiotherapy
+ 1

Java
HTML
CSS
+ 1

Kadi4Mat

Kadi4Mat is a generic and open source virtual research environment.

Aeronautics, Space and Transport
Earth & Environment
Electronic Lab Notebook
+ 9

Python
Vue
HTML
+ 2

hCoCena - horizontal integration and analysis of transcriptomics datasets

hCoCena is an R-package that allows you to comprehensively and easily analyse your transcriptomics data. It also provides the option to integrate several datasets using a network-based integration approach and analyse them jointly. Tutorials and a Docker image exist to help you get to know the tool.

Data analysis
Gene Expression
Health
+ 1

Prospective Monitoring and Management - App (PIA)

PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS

Data Collection
Digital Infrastructure
epidemiology
+ 5

TypeScript
HTML
JavaScript
+ 9