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HIFIS Software Spotlights

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1-12 of 32

Alpaca

Alpaca (Automated Lightweight Provenance Capture) captures the provenance during the execution of Python scripts that process data and stores the information using a data model based on the the W3C PROV standard.

FAIR Data
Information
metadata
+ 3

Python

anndata

anndata is a Python package for handling annotated data matrices in memory and on disk, positioned between pandas and xarray. anndata offers a broad range of computationally efficient features including, among others, sparse data support, lazy operations, and a PyTorch interface.

bioinformatics
data managment
FAIR Data
+ 1

Python

AROSICS

AROSICS is an automated and robust open-source image co-registration software for multi-sensor satellite data.

Earth & Environment
Fourier Shift Theorem
Geometric Pre-processing
+ 8

Python
Makefile
Shell

129

calibr8

calibr8 is a Python toolbox for likelihood-based calibration modeling and Bayesian inference. It supports uni- and multivariate problems, continuous & discrete distributions and includes ready to use models for many non-linear problems. It integrates with PyMC for advanced Bayesian inference.

Calibration
Data analysis
Earth & Environment
+ 4

Jupyter Notebook
Python

Collector App

The Collector App is the backend of the biotic database system called CRITTERBASE. It is used for the import and administration of the underlying data.

Biota
data
data warehouse
+ 7

Copy-Paste Imputation (CPI) for Energy Time Series

This project provides a Python implementation of an imputation method for energy time series. The CPI method copies data blocks with similar characteristics and pastes them into gaps of the time series while preserving the total energy of each gap.

Earth & Environment
Energy
ESD
+ 2

Python

ESM-Tools

ESM-Tools is a toolbox to assist you in running climate and Earth System Model simulations.

Earth & Environment
Earth System Modelling
FAIR Software
+ 11

Python
Shell
Fortran
+ 4

Global Benchmark Database (GBD)

GBD is a comprehensive suite of tools for provisioning and sustainably maintaining benchmark instances and their metadata for empirical research on hard algorithmic problem classes.

Data analysis
FAIR Software
Information
+ 4

Python
JavaScript
HTML
+ 2

HiSim - Household Infrastructure and Building Simulator

HiSim is a Python package for simulation and analysis of household scenarios and building systems using modern components as alternative to fossil fuel based ones. This package integrates load profiles generation of electricity consumption, heating demand, electricity generation.

ESD - Topic 1
Modeling
python
+ 1

Python
Jupyter Notebook
TeX
+ 3

InteractiveVis

The InteractiveVis software framework provides a blueprint for evaluating 3D datasets with convolutional neural networks (CNNs), and for deriving and visualizing CNN relevance maps. This tool was developed and tested for disease detection in MRI scans. We plan to extend it to other domains.

Data Visualization
MRI
open source
+ 1

Jupyter Notebook
HTML
MATLAB
+ 5

ioProc

ioProc is a light-weight workflow manager for Python ensuring robust, scalable and reproducible data pipelines. The tool is developed at the German Aerospace Center (DLR) for and in the scientific context of energy systems analysis, however, it is widely applicable in other scientific fields.

Data analysis
FAIR Data
metadata
+ 4

Python
Batchfile
Makefile

Julearn

Julearn aims to provide an easy-to-use but flexible interface to build predictive models with cross-validation (CV) consistent performance estimates. It poses as a solution accessible to domain experts without extensive ML training, enabling them to quickly fit and evaluate ML algorithms.

Machine learning
Neuroimaging
python

Python