All software
DataLad
DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.
- DataLad
- data managment
- data sharing
- + 8
- Python
- Shell
- Makefile
- + 4
Earth System Model Evaluation Tool (ESMValTool)
- climate modelling
- Data analysis
- Earth & Environment
- + 4
- Python
- NCL
- R
- + 7
4C Multiphysics
4C is a parallel multiphysics research code for simulating solid/fluid mechanics, scalar transport, and chemical reactions. It supports both single-field and coupled systems, offering ready-to-use solutions for a wide range of physical problems.
- Computational Fluid Dynamics
- High performance computing
- Information
- + 3
- C++
- CMake
- Python
- + 6
ESMValCore
- Data analysis
- Earth & Environment
- FAIR Software
- + 2
- Python
- Jupyter Notebook
- HTML
- + 4
MEmilio
MEmilio implements various models for infectious disease dynamics, from compartmental to agent-based models. Through efficient implementation and parallelization, MEmilio brings cutting edge and compute intensive models to a large scale, enabling high-resolution spatiotemporal disease dynamics.
- Agent-based Model
- C++
- compartmental model
- + 12
- C++
- Python
- CMake
- + 3
spacemake
Processing and analysis of large-scale spatial transcriptomics data
- Pipeline
- snakemake
- Spatial transcriptomics
- Python
- Jupyter Notebook
- Shell
- + 3
ESM-Tools
ESM-Tools is a toolbox to assist you in running climate and Earth System Model simulations.
- Earth & Environment
- Earth System Modelling
- FAIR Software
- + 11
- Shell
- Python
- Fortran
- + 5
Kaapana
Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
- data managment
- Federated Learning
- Image processing
- + 2
- Python
- Vue
- Shell
- + 14
Data Analytics Software Project - Python bindings
Python RPC wrapper for the data analytics software framework DASF
- Data analysis
- Data Analytics Software Framework (DASF)
- Digital Earth
- + 4
- Python
- Jinja
- BibTeX
- + 1
Ansible Collection - hifis.toolkit
This collection provides production-ready Ansible roles used for providing services used in research and by research software engineers, but not exclusively. The collection is used to deploy popular Helmholtz Cloud services like the Helmholtz Codebase and its CI infrastructure.
- Jinja
DataLad Container extension
This DataLad extension package equips DataLad's run/rerun functionality with the ability to transparently execute commands in containerized computational environments. On re-run, DataLad will automatically obtain any required container at the correct version prior execution.
- DataLad
- data managment
- Workflow Execution
- Python
- Shell
- Makefile
- + 2
DataLad NEXT extension
This DataLad extension is a staging area for add-ons, for performance upgrades, and user experience improvements. Unlike other topical extensions, the focus is on functionality with broad applicability.
- data distribution
- DataLad
- data management
- Python
- Shell
- Batchfile
- + 2