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1-12 of 260

QUAST

QUAST is a state-of-the-art tool for (meta)genome assembly evaluation, computing over 50 quality metrics and presenting results in plain text, static plots, and interactive HTML reports.

Data Visualization
FAIR Software
Genome assembly
+ 4

AMPL
C++
Python
+ 12

10336

CP2K

CP2K is a quantum chemistry and solid state physics software package running on graphics processing units and thousands of processing units. It is open-source and allows simulations, spectroscopy, vibrational analysis and energy minimization on a vast variety of theory levels.

electronic structure
GPU
High performance computing
+ 5

Fortran
C
Python
+ 13

2713

anvi'o

anvi'o is an open-source software platform for microbial 'omics research enabling analysis and visualization of 'omics data. In development since 2014, it is currently being maintained by the Ecosystem Data Science group at the Helmholtz Institute for Functional Marine Biodiversity.

Data analysis
Data Visualization
Metagenomics
+ 4

Python
JavaScript
HTML
+ 5

2293

REMix

REMix is a powerful software for energy systems optimization. It can be used for the planning and techno-economical assessment of future multi-energy systems of any spatial, temporal and technological scope. REMix offers a wide range of methods and features that can be flexibly selected by the user.

Energy
Energy planning
ESD
+ 5

GAMS
Python
Dockerfile

1729

KeY

KeY is a deductive verification system for Java programs

Deductive Verification
First-Order Logic
Formal Verification
+ 3

Java
HTML
ANTLR
+ 15

1021

ETHOS.FINE - Framework for Integrated Energy System Assessment

ETHOS.FINE provides a framework for modeling, optimizing and assessing energy systems. Systems with multiple regions, commodities and time steps can be modeled. Target of the optimization is the minimization of the total annual cost while considering technical and environmental constraints.

Energy
Energy planning
ESD
+ 6

Python
Dockerfile

921

OpenGeoSys

OpenGeoSys (OGS) is a scientific open source project for the development of numerical methods for the simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media.

Earth & Environment
geotechnics
geothermal modeling
+ 5

C++
AGS Script
TypeScript
+ 2

735

NEST

NEST is a simulator for spiking neuronal networks. A well tested and efficient tool, NEST works on your laptop and also on the world’s largest supercomputers to study behaviour of large networks of neurons.

Computational neuroscience
exascale
Modeling
+ 3

C++
Python
CMake
+ 3

119

542

JPlag

JPlag is one of the most popular source code plagiarism detection systems worldwide.

Automated Obfuscation Attack
Collusion Detection
Data analysis
+ 9

Java
ANTLR
Vue
+ 16

541

PIConGPU

PIConGPU is a relativistic Particle-in-Cell code running on graphic processing units as well as regular multi-core processors. It is Open Source und is freely available for download. It can be used to study plasmas with relativistic dynamics, solving the Maxwell-Vlasov system of equations.

C++
Python
Shell
+ 5

537

ASPECT - The Advanced Solver for Planetary Evolution, Convection, and Tectonics

ASPECT is a code to simulate convection and tectonic processes in the Earth and other planetary bodies. It has grown from a mantle-convection code into a tool for many geodynamic applications, like glacial isostatic adjustment, lithospheric scale deformation, ore formation and two-phase flow.

C++
CFD
Computational Fluid Dynamics
+ 6

C++
Python
CMake
+ 10

505

DataLad

DataLad is a tool for the joint management of code, data, and their relationship, built on top of the version control systems Git & git-annex. It adapts principles of open-source software development & distribution to address challenges of data management, data sharing, & digital provenance capture.

DataLad
data managment
data sharing
+ 8

Python
Shell
Makefile
+ 4

497