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13-24 of 200

AROSICS

AROSICS is an automated and robust open-source image co-registration software for multi-sensor satellite data.

Earth & Environment
Fourier Shift Theorem
Geometric Pre-processing
+ 8

Python
Makefile
Shell

172

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

Data analysis
Deep Learning
Image processing
+ 3

Jupyter Notebook
Python
Shell
+ 1

157

openCARP

openCARP is a multiscale cardiac electrophysiology simulator for in silico experiments ranging from single heart cells and cardiac tissue to organ models up to the body surface ECG.

computational cardiology
electrophysiology
Health
+ 2

C++
Python
C
+ 2

143

GOLEM

GOLEM is a modelling platform for thermal-hydraulic-mechanical and non-reactive chemical processes in fractured and faulted porous media, based on the MOOSE framework

Earth & Environment
Multiphysics of porous fractured rocks
reservoir behaviour and induced seismicity
+ 1

C++
SWIG
Assembly
+ 5

128

pycomlink

A python toolbox for deriving rainfall information from commercial microwave link (CML) data.

precipitation estimation
python
rainfall
+ 2

Jupyter Notebook
Python

121

BrainPrint

Our BrainPrint tools provide shape descriptors of neuroanatomical structures and require a FreeSurfer or FastSurfer segmentation as a pre-processing step. BrainPrint is based on “ShapeDNA” a spectral shape descriptor.

Data analysis
MRI
open source
+ 1

Python

113

XRAYPAC

A software package for modeling x-ray-induced dynamics of matter

light-matter interaction
radiation chemistry
structural imaging
+ 3

Fortran Free Form
Python
Shell
+ 2

101

GSTools

GSTools is a Python-based software suite for solving a wide range of geostatistical problems. GSTools provides methods for generating different classes of correlated random fields; it can perform kriging, variogram estimation and much more.

covariance-model
geospatial
geostatistics
+ 7

Python
Cython

JEMRIS

JEMRIS is a versatile, open-source, multi-purpose MRI simulator. It is well-suited for research and education.

MRI
Simulation

C++
Python
MATLAB
+ 4

alpaka

The alpaka library is a header-only C++17 abstraction framework designed for computing accelerator development. It enables developers to implement algorithms once and execute them across a range of platforms, including x86, ARM, and RISC-V CPUs, as well as accelerators from NVIDIA, AMD, and Intel.

C++
CPU
CUDA
+ 7

C++
CMake
Shell
+ 2

Allpix Squared

Allpix Squared is a semiconductor detector simulation framework. The goal of the framework is to provide a complete and easy-to-use package for end-to-end simulations of semiconductor detector performance from incident ionizing radiation until the digitization of hits in the detector chip.

Drift-Diffusion
Geant4
Monte Carlo
+ 5

C++
CMake
C
+ 2

Fastscape Toolbox

Fastscape is a set of open-source software components aimed at making landscape evolution models and topographic analysis algorithms readily accessible to a wide range of users.

Earth & Environment
Geomorphology
landscape
+ 2

Python