All software
Trimmomatic
Trimmomatic is a command line tool that performs a variety of functions for Illumina paired-end and single-end sequencing data, including sequence trimming and adapter removal. It is a flexible and efficient NGS preprocessing tool, which greatly improves downstream applications.
- Earth & Environment
- Illumina
- NGS
- Java
wps-command-line-tool-repository
A wrapper framework around the WPS 4.0 server by 52° North to allow easy integration of command line scripts into WPS services.
- Earth & Environment
- Remote Procedure Calls
- Web Processing Service
- Java
- Scheme
- Python
- + 3
Cat4KIT
Cat4KIT is an open-source framework for cataloging, managing and publishing research data according to the FAIR principles. Building on the STAC-Ecosystem, it allows for a simple and user-friendly description, integration and discovery of research data.
- data managment
- Earth & Environment
- FAIR Data
- + 2
DeepLOKI
DeepLOKI is an AI-based software that uses deep learning to classify zooplankton species from high-resolution images, improving research efficiency by enabling faster and more accurate onboard image analysis in marine science.
- Data analysis
- Earth & Environment
- Machine learning
- + 2
- Python
DeepTrees🌳
Tree Crown Segmentation and Analysis in Remote Sensing Imagery with PyTorch
- Deep Learning
- Earth & Environment
- open source
- + 3
- Jupyter Notebook
- Python
- Shell
- + 1
easyWave
easyWave-GPU computes tsunami wave propagations in a fraction of minute on GPU-powered machines. Thus , a single simulation, or several simulations with varying granularity, covering several hours of tsunami wave propagation, and tailored to the actual situation can be computed within seconds.
- early warning
- Earth & Environment
- tsunami forecasting
- C++
- Cuda
- Python
- + 2
FESOM
FESOM (Finite-Element/volumE Sea ice-Ocean Model) is a multi-resolution sea ice-ocean model that solves the equations of motion on unstructured meshes.
- climate modelling
- Earth & Environment
- exascale
- + 5
- Fortran
- Jupyter Notebook
- C
- + 9
FishInspector
The software FishInspector provides automatic feature detections in images of zebrafish embryos (body size, eye size, pigmentation). It is Matlab-based and provided as a Windows executable (no matlab installation needed).
- Earth & Environment
- image feature detection
- pattern recognition
- + 1
- MATLAB
- HTML
FraCSPy
FraCSPy (Framework for Conventional microSeismic Processing) is an open-source Python library focused on providing conventional microseismic monitoring tools, particularly for the purpose of benchmarking newly proposed algorithms and workflows.
- eaqrthquakes
- Earth & Environment
- geophysics
- + 8
- GLSL
- Python
- Shell
- + 2
GeoMultiSens
GeoMultiSens provides an integrated processing pipeline to support the analysis of homogenized data from various remote sensing archives.
- Earth & Environment
- multi-sensor analysis
- Remote sensing
gfzrnx
The unique GFZ software gfzrnx plays a central role for the processing of RINEX files from GNSS observations. The toolbox for file check and manipulation supports RINEX observation, navigation and meteorological data.
- BEIDOU
- Earth & Environment
- Galileo
- + 6
GIPPtools
A collection of software utilities that aid with initial pre-processing of recorded (seismic) data supporting users that borrow instruments from the GIPP.
- Cube
- Earth & Environment
- geophysics
- + 4
- Java
- TeX
- Shell
- + 2