All software
eCLM
The enCore Community Land Model (eCLM) is based on the Community Land Model version 5, representing land surface processes including hydrology, biogeophysics, biogeochemistry and ecosystem dynamics.
- Biogeochemistry
- Earth System Modelling
- FAIR Software
- + 2
- Fortran
- CMake
- Perl
- + 6
Forgejo-aneksajo
A data management and collaboration platform based on Forgejo and extended with git-annex support. Essentially a git forge for data projects. It interoperates well with DataLad and provides a nice collaborative web hosting for datasets containing issue trackers, pull requests, CI, and more.
- collaboration
- data management
- Earth & Environment
- + 8
microGWAS
microGWAS is a snakemake-powered pipeline to carry out an end-to-end microbial GWAS analysis. Starting from genome assemblies and a phenotype file, microGWAS will run a number of associations using pyseer, annotate the associations results, and generating a number of functional enrichment tests.
- GWAS
- mGWAS
- Pipeline
- + 2
- Python
- Shell
- R
SicHash
A perfect hash function is a function that has no collisions on a given set. SicHash places objects in a cuckoo hash table and then stores the final hash function choice of each object in a retrieval data structure. Using irregular cuckoo hashing, each object has a different number of hash functions
- C++
- TeX
- Shell
- + 2
stream2segment
A Python library and command line application to download, process and visualize event-based seismic waveform segments, specifically designed to manage big volumes of data
- Big data
- data managment
- Data Visualization
- + 5
- Python
- Jupyter Notebook
- HTML
- + 1
TomoBEAR
TomoBEAR is an open-source configurable and customizable modular pipeline for streamlined and parallelized processing of large-scale cryo-electron tomography data for subtomogram averaging.
- Alignment
- automated reasoning
- cluster
- + 16
- MATLAB
- M
- Python
- + 1
atoMEC
atoMEC is a python-based average-atom code for simulations of high energy density phenomena such as in warm dense matter. It is designed as an open-source and modular python package.
- Matter
- Python
- Shell
Data Analytics Software Project - Python bindings
Python RPC wrapper for the data analytics software framework DASF
- Data analysis
- Data Analytics Software Framework (DASF)
- Digital Earth
- + 4
- Python
- Jinja
- BibTeX
- + 1
Digital Earth Viewer
The Digital Earth Viewer is a tool for the visualisation and exploration of geospatial data in true 3D over time. It runs on Windows, MacOS and Linux and only requires a modern webbrowser to use. Common file formats such as CSV, netCDF, GeoTIFF and many more are natively supported.
- Data Visualization
- Earth & Environment
- Environmental Data
- + 1
- Rust
- JavaScript
- TypeScript
- + 2
Emipy
Emipy is a Python package to access, manipulate, analyze and visualize data on various pollutants, which is collected in the European Pollutant Release Register (E-PRTR). Therefore, it enables the easy use of this data for research in different fields (e.g., public health or energy system analysis).
- Data analysis
- Earth & Environment
- Energy
- + 3
- Python
hermes
Implementation of the HERMES workflow to automate software publication with rich metadata.
- FAIR Software
- metadata
- python
- Python
HIPSTA
The HIPpocampal Shape and Thickness Analysis Toolbox (HIPSTA) present a geometry-based method for the analysis of local hippocampal thickness and curvature and constructs an intrinsic coordinate system (unrolling/flattening) for statistical analysis across multiple participants.
- MRI
- Neuroimaging
- open source
- + 1
- Python
- Dockerfile