All software
shepard
shepard is a multi-database storage system for highly heterogenous experimental research data. Simple connection options via standardized interfaces enable the automated recording of data including an annotation with meta information.
- Aeronautics, Space and Transport
- data managment
- Industry 4.0
- + 1
SimCATS
Simulation of CSDs for Automated Tuning Solutions (SimCATS) is a python framework for simulating charge stability diagrams (CSDs) typically measured during the tuning process of qubits.
- open source
- python
- Quantum Dots
- + 1
- Jupyter Notebook
- Python
AiiDA-Spirit
AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).
- data managment
- Data Visualization
- FAIR Data
- + 5
- JavaScript
- Python
- HTML
- + 1
eCLM
The enCore Community Land Model (eCLM) is based on the Community Land Model version 5, representing land surface processes including hydrology, biogeophysics, biogeochemistry and ecosystem dynamics.
- Biogeochemistry
- Earth System Modelling
- FAIR Software
- + 2
- Fortran
- CMake
- Perl
- + 6
Forgejo-aneksajo
A data management and collaboration platform based on Forgejo and extended with git-annex support. Essentially a git forge for data projects. It interoperates well with DataLad and provides a nice collaborative web hosting for datasets containing issue trackers, pull requests, CI, and more.
- collaboration
- data management
- Earth & Environment
- + 8
Helmholtz Research Software Directory
The Helmholtz Research Software Directory is a place to discover and promote research software. Designed for Research Software Engineers and Scientists, it aims to foster FAIR and reuseability of software.
- FAIR Software
- TSX
- TypeScript
- PLpgSQL
- + 2
microGWAS
microGWAS is a snakemake-powered pipeline to carry out an end-to-end microbial GWAS analysis. Starting from genome assemblies and a phenotype file, microGWAS will run a number of associations using pyseer, annotate the associations results, and generating a number of functional enrichment tests.
- GWAS
- mGWAS
- Pipeline
- + 2
- Python
- Shell
- R
Multiphase Cases Repository by HZDR for OpenFOAM Foundation Software
This repository contains simulation setups for Multiphase Code Repository by HZDR. The simulation setups are divided into mono- and polydisperse bubbly flows utilizing the set of Baseline models of HZDR, setups using the morphology-adaptive multifield two-fluid model and miscellaneous cases.
- Baseline model
- Computational Fluid Dynamics
- Euler-Euler method
- + 9
SicHash
A perfect hash function is a function that has no collisions on a given set. SicHash places objects in a cuckoo hash table and then stores the final hash function choice of each object in a retrieval data structure. Using irregular cuckoo hashing, each object has a different number of hash functions
- C++
- TeX
- Shell
- + 2
stream2segment
A Python library and command line application to download, process and visualize event-based seismic waveform segments, specifically designed to manage big volumes of data
- Big data
- data managment
- Data Visualization
- + 5
- Python
- Jupyter Notebook
- HTML
- + 1
TomoBEAR
TomoBEAR is an open-source configurable and customizable modular pipeline for streamlined and parallelized processing of large-scale cryo-electron tomography data for subtomogram averaging.
- Alignment
- automated reasoning
- cluster
- + 16
- MATLAB
- M
- Python
- + 1
13CFLUX
13CFLUX - third-generation, high-performance simulation engine for isotopically stationary and non-stationary 13C metabolic flux analysis within an open, extensible software ecosystem.
- Biotechnology
- Fluxomics
- Isotope labeling
- + 6
- C++
- Python
- CMake
- + 2