All software
13CFLUX
13CFLUX - third-generation, high-performance simulation engine for isotopically stationary and non-stationary 13C metabolic flux analysis within an open, extensible software ecosystem.
- Biotechnology
- Fluxomics
- Isotope labeling
- + 6
- C++
- Python
- CMake
- + 2
BioAutoML - Democratizing Machine Learning in Life Sciences
BioAutoML automatically runs an end-to-end ML pipeline that can be effectively employed by non-experts. BioAutoML does not require specialized human assistance, i.e., it only needs a training dataset of biological sequences (FASTA files) to perform an end-to-end ML experiment.
- Artificial Intelligence
- Big data
- BioAutoML
- + 3
- Jupyter Notebook
- Python
Helmholtz Research Software Directory
The Helmholtz Research Software Directory is a place to discover and promote research software. Designed for Research Software Engineers and Scientists, it aims to foster FAIR and reuseability of software.
- FAIR Software
- TSX
- TypeScript
- PLpgSQL
- + 2
JUBE
JUBE is a generic, lightweight, configurable environment to run, monitor and analyse application execution in a systematic way. This software is commonly used to execute benchmarks and complex workflows on High Performance Computers, but is not limited to these systems.
- Benchmark
- Benchmarking
- High performance computing
- + 5
- Python
- Shell
- C
Mibianto
Mibianto is an easy to use web service for efficient compositional analysis of metagenomic sequencing data. By using FracMinHash on client side the uploaded sequence data is anonymized and drastically reduced in size.
- Data analysis
- Metagenomics
- Web application
- + 1
MLAir
MLAir (Machine Learning on Air data) is an environment that simplifies and accelerates the creation of new machine learning (ML) models for the analysis and forecasting of meteorological and air quality time series.
- Python
- Shell
- Jupyter Notebook
- + 2
Prospective Monitoring and Management - App (PIA)
PIA is a free open-source eResearch System for monitoring of incident events and provides a digital infrastructure for conducting population-based studies in any research field - at a study centre or at home. PIA focuses on repeated surveys. #DigitalEpidemiology #LongitudinalDataCollection #FOSS
- Data Collection
- Digital Infrastructure
- epidemiology
- + 5
- TypeScript
- HTML
- JavaScript
- + 11
QuaCCAToo
QuaCCAToo is a Python library for simulating and analyzing spin dynamics of color centers under different experiments. The systems’ time evolution under pulsed sequences are calculated through quantum master equations based on the provided Hamiltonian, with realistic pulses in the laboratory frame.
- Color Centers
- Pulsed Experiments
- Quantum Technologies
- + 1
- Python
shepard
shepard is a multi-database storage system for highly heterogenous experimental research data. Simple connection options via standardized interfaces enable the automated recording of data including an annotation with meta information.
- Aeronautics, Space and Transport
- data managment
- Industry 4.0
- + 1
ShockHash
A perfect hash function is a function that has no collisions on a given set. ShockHash constructs very compact perfect hash functions significantly faster than previous approaches.
- C++
- CMake
- Shell
AiiDA-Spirit
AiiDA plugin for FAIR high-throughput spin-dynamics simulations with the Spirit code (http://spirit-code.github.io/).
- data managment
- Data Visualization
- FAIR Data
- + 5
- JavaScript
- Python
- HTML
- + 1
AutoPQ
Automated point forecast-based quantile forecasts
- Energy
- ESD
- ESD - Topic 2
- + 3
- Python