All software
FastSurfer
FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.
- Data analysis
- Deep Learning
- Image processing
- + 3
- Python
- Jupyter Notebook
- Shell
- + 1
CryoGrid
The CryoGrid Model Suite provides a set of numerical tools for simulating the thermal soil regime and the ice-water balance for permafrost and glaciers. Depending on the application needs different model tools are offered, characterized by different levels complexity and modularity.
- Climate
- Earth & Environment
- Modeling
- + 1
- MATLAB
- HTML
- Mercury
- + 2
SeisBench: A toolbox for machine learning in seismology
SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.
- Earth & Environment
- GPU
- Helmholtz AI
- + 4
- Jupyter Notebook
- Python
- C
KaHyPar
KaHyPar is a fast, high-quality, and scalable algorithm for partitioning graphs and hypergraphs with billions of edges. It finds applications in minimizing communication costs for distributed (hyper)graph computations, quantum circuit simulations, storage sharding in databases, and VLSI design.
- Clustering
- Data analysis
- Graphs
- + 8
MIRP
MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.
- Medical Image Processing
- python
- radiomics
- Python
- Jupyter Notebook
- R
- + 2
EnrichedHeatmap
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. The EnrichedHeatmap package provides advanced solutions for normalizing genomic signals within target regions as well as offering highly customizable visualizations.
- Data analysis
- Data Visualization
- FAIR Data
- + 2
- R
- CSS
- C++
AMIRIS
AMIRIS is the open Agent-based Market model for the Investigation of Renewable and Integrated energy Systems. It aims at enabling scientists to dissect the complex questions arising with respect to future energy markets, their market design, and energy-related policy instruments.
- Agent-based Model
- electricity
- Energy
- + 4
- Java
- Python
- BibTeX
JURASSIC
The Juelich Rapid Spectral Simulation Code (JURASSIC) is a fast infrared radiative transfer model for the analysis of atmospheric remote sensing measurements.
- Atmospheric science
- Climate
- Earth & Environment
- + 5
- C
- Shell
- Visual Basic 6.0
- + 1
Spex
Spex is a computer code based on many-body perturbation theory and is part of the FLEUR code family. It uses the full-potential linearized augmented plane-wave method (FLAPW), which provides an accurate basis set for all kinds of materials including transition metals, oxides, and f-electron systems.
CoMOLA
CoMOLA is a python tool for optimal spatial allocation of land uses. The tool creates optimal land-use maps for up to four objectives. It takes into account constraints and can be coupled with external models to evaluate different objectives (e.g. ecosystem services/biodiversity models)
- land-use allocation
- multi-objective optimization
- NSGA-II
- Python
- R
FlexiGIS
FlexiGIS is a software tool for processing and analysing GIS-based data to design urban energy systems. Models developed with FlexiGIS enable the exploration and assessment of flexibility options in cities.
- Data analysis
- Energy
- Energy planning
- + 4
- Python
- Makefile
GSTools
GSTools is a Python-based software suite for solving a wide range of geostatistical problems. GSTools provides methods for generating different classes of correlated random fields; it can perform kriging, variogram estimation and much more.
- covariance-model
- geospatial
- geostatistics
- + 7
- Python