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HIFIS Software Spotlights

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1-12 of 39

OpenGeoSys

OpenGeoSys (OGS) is a scientific open source project for the development of numerical methods for the simulation of thermo-hydro-mechanical-chemical (THMC) processes in porous and fractured media.

Earth & Environment
geotechnics
geothermal modeling
+ 5

Jupyter Notebook
C++
AGS Script
+ 2

637

FastSurfer

FastSurfer is a fast and accurate deep-learning pipeline for the analysis of human brain MRI. FastSurfer provides a fully compatible FreeSurfer alternative for volumetric and surface-based thickness analysis, also supporting sub-mm resolutions, and sub-segmentation of neuroanatomical structures.

Data analysis
Deep Learning
Image processing
+ 3

Jupyter Notebook
Python
Shell
+ 1

259

MIRP

MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP to process images as input for deep learning models.

Medical Image Processing
python
radiomics

Python
Jupyter Notebook
R
+ 2

201

pycomlink

A python toolbox for deriving rainfall information from commercial microwave link (CML) data.

precipitation estimation
python
rainfall
+ 2

Jupyter Notebook
Python

123

Heat

Heat is a flexible and seamless open-source software for high performance data analytics and machine learning. It provides highly optimized algorithms and data structures for tensor computations using CPUs, GPUs and distributed cluster systems on top of MPI.

CPU
Data analysis
GPU
+ 4

Python
Jupyter Notebook
Shell
+ 1

LiberTEM

LiberTEM is an open source platform for high-throughput distributed processing of large-scale binary data sets and live data streams using a stream-based programming model. The current focus is pixelated scanning transmission electron microscopy (4DSTEM) and scanning electron beam diffraction data.

4D STEM
electron microscopy
high-throughput
+ 3

Python
TypeScript
JavaScript
+ 6

SeisBench: A toolbox for machine learning in seismology

SeisBench is an open-source Python toolbox for machine learning in seismology. It brings together the whole machine learning model lifecycle: datasets and benchmarks, models and training pipelines, and efficient implementations for deploying the models in production.

Earth & Environment
GPU
Helmholtz AI
+ 4

Jupyter Notebook
Python

calibr8

calibr8 is a Python toolbox for likelihood-based calibration modeling and Bayesian inference. It supports uni- and multivariate problems, continuous & discrete distributions and includes ready to use models for many non-linear problems. It integrates with PyMC for advanced Bayesian inference.

Calibration
Data analysis
Earth & Environment
+ 4

Jupyter Notebook
Python

ESM-Tools

ESM-Tools is a toolbox to assist you in running climate and Earth System Model simulations.

Earth & Environment
Earth System Modelling
FAIR Software
+ 11

Python
Shell
Fortran
+ 4

DL4PuDe

DL4PuDe is an AI-based framework that automatically detects pushing behavior in crowd videos, leading to a better understanding of pushing dynamics. This knowledge is crucial for better crowd management strategies and better design of public places, making public places more comfortable and safer.

Artificial Intelligence
Crowd Management
Deep Learning
+ 3

Jupyter Notebook
Python
Cuda
+ 2

EuLerian Identification of ascending AirStreams - ELIAS 2.0

The ELIAS 2.0 software allows the identification of the footprints of rapidly ascending air streams in the atmosphere at substantially reduced computational costs compared to a conventional trajectory approach.

Atmospheric science
Earth & Environment
Machine learning
+ 1

Python
Jupyter Notebook

Kaapana

Kaapana is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.

data managment
Federated Learning
Image processing
+ 2

Python
Shell
Vue
+ 12